Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11940 393 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G62305 390 / 3e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G14550 333 / 6e-112 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G10280 156 / 2e-43 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT2G19160 154 / 1e-42 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G57270 153 / 2e-42 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2.3) AT4G31350 149 / 4e-41 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G30060 148 / 2e-40 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 146 / 1e-39 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10880 149 / 2e-39 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020037 [exp] 670 / 0 AT1G11940 442 / 2e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10030027 [exp] 334 / 3e-112 AT1G11940 369 / 1e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035297 [exp] 333 / 7e-112 AT1G11940 371 / 4e-127 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10022242 [exp] 330 / 6e-111 AT5G14550 554 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10008770 [exp] 330 / 1e-110 AT5G14550 558 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10026959 [exp] 160 / 8e-45 AT4G31350 490 / 8e-174 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10025464 [exp] 155 / 5e-43 AT2G19160 550 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10024468 [exp] 152 / 5e-42 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002989 [exp] 152 / 6e-42 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G009500 [exp] 477 / 1e-168 AT1G62305 428 / 7e-150 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.002G227000 [exp] 346 / 9e-117 AT1G11940 369 / 7e-126 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G348400 [exp] 333 / 6e-112 AT5G14550 509 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.004G228100 [exp] 154 / 8e-43 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G076600 [exp] 152 / 6e-42 AT2G19160 560 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G143900 [exp] 151 / 1e-41 AT2G19160 564 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 150 / 3e-41 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 149 / 3e-41 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 149 / 4e-41 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 149 / 1e-40 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10015553 pacid=23173668 polypeptide=Lus10015553 locus=Lus10015553.g ID=Lus10015553.BGIv1.0 annot-version=v1.0 ATGTCGCTCCCTCTTTTCACTGAAAGAAGAAGTAGACGATTGAGAAGCATGAGCAGGAAAACCCCTCCACAATTACTAGCACTAGTTTCCCCTCCTCACC GACGCTGGAAGCTCTCCATCCTCTTCTTCATCTCCCTCCTCGCCATCCTCAACCTTCACTTGTACTGCTCCTCCTTCTCCGCCGTCGACACATCTTCCAA TATCTCCCGCTCCAGGCTACCCCTCACCTTCGATGGACCCCCCAAGATCGCTTTCCTTTTCCTCGTCCGCCTCAATCTCCCCCTCGATTTCGTCTGGGCT GCCTTCTTCGACGCTGCTGGCGTGCCTTCTAACTTCTCCATCTTTCTCCATTCCTCCGCCCCTGGTTTTGAGTTGAATGAATCAACCACCAGATCCCCTC ACTTTTATCGCCGCCACTTGAATACTTCTATTCAGGTGAAATGGGGAGAATCAAGTATGTTAAAAGCCGAGAAGTTGCTCCTTGCTGCTGCCTTGGACGA TCCTGCTAATCAGCGTTTCCTTCTTCTTTCCGACAGCTGCGTCCCTTTGTACAACTTTACTTACATTTACAACTACCTGATGGCTTCTCCTAGGAGTTTC GTGGACAGTTTTCTTGATATGAAGGAAGGCCGCTACAACCCAAAGATGTCGCCTGTTATACCAATGCATAAATGGCGGAAAGGATCCCAGTGGATCACCT TAATCCGGAGCCATGCAGAATTGGTCGCAGATGATGATGTTATATTGGCAGTTTTCAAGAAGTTTTGCAAGCGACGCCCGCCAGTTGATGCTAGTTACGG AAAGCTTAATGTGATACTTCAGAAGCAACACAATTGTATTCCAGACGAGCATTATGTTCAAACACTGCTTGCGATGAGCGGGGTGGAAAATGAGCTTGAA AGAAGAACGGTGACTTACACAGAGTGGCATCAGTCGGCAAATACGATGGAGAACACAGGTTGGCATCCAACAACATTCACGTACGCGAATGCCGGCCCAA ACACGATTAAATCGATCAAGGATATAGATCATGTGTATTACGAGACAGAGTATCGAACGGAATGGTGCCACAGTAACTCAACATCCGTCCCTTGCTTTTT GTTCGGGAGGAAGTTCTCGAGAGGAGCTGCCATGCGGATATTGAGCGATGGTTTGGTGGGTCGTTTTGATGCCTCTACCCTATTATCGACCACACCAATA CCACCTACGTGA
AA sequence Show only first row Show all	>Lus10015553 pacid=23173668 polypeptide=Lus10015553 locus=Lus10015553.g ID=Lus10015553.BGIv1.0 annot-version=v1.0 MSLPLFTERRSRRLRSMSRKTPPQLLALVSPPHRRWKLSILFFISLLAILNLHLYCSSFSAVDTSSNISRSRLPLTFDGPPKIAFLFLVRLNLPLDFVWA AFFDAAGVPSNFSIFLHSSAPGFELNESTTRSPHFYRRHLNTSIQVKWGESSMLKAEKLLLAAALDDPANQRFLLLSDSCVPLYNFTYIYNYLMASPRSF VDSFLDMKEGRYNPKMSPVIPMHKWRKGSQWITLIRSHAELVADDDVILAVFKKFCKRRPPVDASYGKLNVILQKQHNCIPDEHYVQTLLAMSGVENELE RRTVTYTEWHQSANTMENTGWHPTTFTYANAGPNTIKSIKDIDHVYYETEYRTEWCHSNSTSVPCFLFGRKFSRGAAMRILSDGLVGRFDASTLLSTTPI PPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10015553 [exp]	0	1
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10043165 [exp]	9.5	0.7929
AT5G09630			LisH/CRA/RING-U-box domains-co...		Lus10007106 [exp]	11.1	0.7969
AT1G20920			P-loop containing nucleoside t...		Lus10035327 [exp]	16.5	0.8025
AT3G55640			Mitochondrial substrate carrie...		Lus10004689 [exp]	23.1	0.7708
AT1G20920			P-loop containing nucleoside t...		Lus10029986 [exp]	27.5	0.7849
AT1G74940			Protein of unknown function (D...		Lus10027642 [exp]	28.2	0.7783
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000356 [exp]	28.4	0.7717
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Lus10017898 [exp]	29.1	0.7800
AT1G20920			P-loop containing nucleoside t...		Lus10035328 [exp]	29.1	0.7916
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030455 [exp]	35.9	0.7958

Compare expression of checked genes

Lus10015553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.