Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41480 432 / 7e-153 Peroxidase superfamily protein (.1) AT5G64120 342 / 2e-117 Peroxidase superfamily protein (.1) AT5G39580 333 / 4e-114 Peroxidase superfamily protein (.1.2) AT5G64110 321 / 3e-109 Peroxidase superfamily protein (.1) AT5G64100 304 / 1e-102 Peroxidase superfamily protein (.1) AT4G25980 305 / 2e-102 Peroxidase superfamily protein (.1) AT1G05260 286 / 2e-95 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT5G17820 285 / 2e-95 Peroxidase superfamily protein (.1) AT1G77100 283 / 3e-94 Peroxidase superfamily protein (.1) AT3G01190 275 / 3e-91 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007051 [exp] 370 / 1e-128 AT2G41480 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10007052 [exp] 360 / 1e-124 AT2G41480 400 / 1e-140 Peroxidase superfamily protein (.1) Lus10012684 [exp] 344 / 4e-118 AT2G41480 395 / 2e-138 Peroxidase superfamily protein (.1) Lus10020826 [exp] 332 / 2e-113 AT2G41480 375 / 1e-130 Peroxidase superfamily protein (.1) Lus10018374 [exp] 279 / 1e-92 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10027164 [exp] 277 / 9e-92 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10007638 [exp] 273 / 2e-90 AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10025535 [exp] 277 / 3e-90 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10015127 [exp] 273 / 4e-90 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G069600 [exp] 479 / 1e-171 AT2G41480 498 / 6e-179 Peroxidase superfamily protein (.1) Potri.018G131600 [exp] 479 / 2e-171 AT2G41480 478 / 4e-171 Peroxidase superfamily protein (.1) Potri.016G125000 [exp] 382 / 3e-133 AT2G41480 419 / 7e-148 Peroxidase superfamily protein (.1) Potri.004G023200 [exp] 283 / 2e-94 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.004G023100 [exp] 278 / 2e-92 AT3G01190 403 / 1e-141 Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 273 / 1e-90 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.012G042800 [exp] 269 / 7e-89 AT1G05260 336 / 2e-115 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 268 / 2e-88 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.003G214500 [exp] 268 / 3e-88 AT5G19890 422 / 4e-149 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 266 / 1e-87 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10015555 pacid=23173649 polypeptide=Lus10015555 locus=Lus10015555.g ID=Lus10015555.BGIv1.0 annot-version=v1.0 ATGGCACCCATGTCGTCGTTTGTCCCTCTGATGATTTTGTTCATGGCATGTTACTGGACTTGGACAAGAACAACAACAGTAGAAGCCCAGTTGACAAATG GGTTTTACTCCTCTTCCTGCCCAAAGGCTGAAGCCATTGTCAAGTCCGCCGTGGAATCAGCCTTTCAGAAAGATCCATCAGTTGCCCCTGGATTGCTTAG GCTTCATTTCCACGACTGCTTCGTTCAGGGCTGCGATGGTTCAGTGTTGATTACAGGTGCTAATGCTGAAAGAAGTGCAGTTCCCAACTTAGGATTGAAA GGCTTTCAAGTCATAGATGATGCTAAGACACAGTTAGAGGCATCCTGCCCCGGTGTCGTCTCTTGCGCCGATATCCTTGCCTTGGCTGCCCGCGATTCCG TCGTTCTGAGTGGCGGTCCAACCTGGACAGTCCAAACTGGGAGAAGAGATGGAAGAGTATCATCAATCTCCCAAGTAGCAAGTTTACCTTCACCATTAGA TTCAATCACTACCCAGAAGCAAAAATTCGCTTCTAAAAACCTTGATGACCACGATCTCGTCACCTTAGTTGGGGCGCATACAATTGGGCAAACACACTGC AAGTTGATCAACTACCGTCTCTACAACTTCACATCGAAGGGAAATGCAGACCCAACGATCAACCAATCTTTCCTAACACAGCTTCGGACACTTTGTCCGA ATGGCGGCGATGAGCTGAAGAAGGTTGCATTGGACAAGGACACTCCGGCGAAATTCGACGTTGAGTTCTTCAAGAATGTGAAGGGTGGGAATGGGGTGTT GGAATCGGACCAGAGGCTTATGGACGACCCAAATACTCGAAGGATCGTGGAGAATTATGCAGGGCCAATAAAAGGACTACTCGGATTACGGTTCGATTTC GAATTCAGAAAGTCCATGACTAAGATGGGTAGCATTGAAGTGAAGACAGGGAGCGTTGGGGAGGTTAGGAAAGTTTGTTCCAAGTTCAATTGA
AA sequence Show only first row Show all	>Lus10015555 pacid=23173649 polypeptide=Lus10015555 locus=Lus10015555.g ID=Lus10015555.BGIv1.0 annot-version=v1.0 MAPMSSFVPLMILFMACYWTWTRTTTVEAQLTNGFYSSSCPKAEAIVKSAVESAFQKDPSVAPGLLRLHFHDCFVQGCDGSVLITGANAERSAVPNLGLK GFQVIDDAKTQLEASCPGVVSCADILALAARDSVVLSGGPTWTVQTGRRDGRVSSISQVASLPSPLDSITTQKQKFASKNLDDHDLVTLVGAHTIGQTHC KLINYRLYNFTSKGNADPTINQSFLTQLRTLCPNGGDELKKVALDKDTPAKFDVEFFKNVKGGNGVLESDQRLMDDPNTRRIVENYAGPIKGLLGLRFDF EFRKSMTKMGSIEVKTGSVGEVRKVCSKFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41480			Peroxidase superfamily protein...		Lus10015555 [exp]	0	1
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10039402 [exp]	1.0	0.8801
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10003336 [exp]	3.5	0.8286
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10024089 [exp]	5.7	0.7925
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021540 [exp]	6.5	0.8475
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Lus10036885 [exp]	12.5	0.8129
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10022639 [exp]	13.5	0.7788
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041050 [exp]	15.0	0.7965
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10013675 [exp]	15.5	0.7744
AT1G76600			unknown protein		Lus10036322 [exp]	15.8	0.7934
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10027146 [exp]	16.9	0.7523

Compare expression of checked genes

Lus10015555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.