Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32580 157 / 3e-49 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) AT1G05070 156 / 5e-49 Protein of unknown function (DUF1068) (.1) AT4G04360 147 / 1e-45 Protein of unknown function (DUF1068) (.1) AT4G30996 114 / 2e-32 NKS1 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) AT2G24290 110 / 5e-31 Protein of unknown function (DUF1068) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020038 [exp] 266 / 2e-92 AT1G05070 167 / 4e-53 Protein of unknown function (DUF1068) (.1) Lus10035288 [exp] 164 / 1e-51 AT1G05070 252 / 1e-86 Protein of unknown function (DUF1068) (.1) Lus10030034 [exp] 160 / 2e-50 AT1G05070 250 / 1e-85 Protein of unknown function (DUF1068) (.1) Lus10019053 [exp] 103 / 3e-28 AT2G24290 259 / 1e-89 Protein of unknown function (DUF1068) (.1) Lus10036299 [exp] 100 / 5e-27 AT2G24290 257 / 1e-88 Protein of unknown function (DUF1068) (.1) Lus10029975 [exp] 68 / 2e-14 AT2G32580 109 / 3e-30 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Lus10035349 [exp] 65 / 2e-13 AT2G32580 110 / 2e-30 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G006500 [exp] 179 / 1e-57 AT2G32580 206 / 6e-68 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.014G155600 [exp] 174 / 4e-56 AT2G32580 245 / 1e-83 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.002G227100 [exp] 174 / 6e-56 AT2G32580 218 / 6e-73 Protein of unknown function (DUF1068) (.1), Protein of unknown function (DUF1068) (.2) Potri.006G187800 [exp] 105 / 5e-29 AT4G30996 198 / 1e-65 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) Potri.018G111100 [exp] 104 / 1e-28 AT4G30996 208 / 2e-69 NA\(+\)- AND K\(+\)-SENSITIVE 1, Protein of unknown function (DUF1068) (.1) Potri.013G026900 [exp] 90 / 7e-23 AT2G24290 114 / 2e-32 Protein of unknown function (DUF1068) (.1) Potri.005G038000 [exp] 84 / 6e-21 AT1G05070 110 / 7e-31 Protein of unknown function (DUF1068) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06364 [flax] [poplar] DUF1068 Protein of unknown function (DUF1068)
Representative CDS sequence Show only first row Show all	>Lus10015556 pacid=23173662 polypeptide=Lus10015556 locus=Lus10015556.g ID=Lus10015556.BGIv1.0 annot-version=v1.0 ATGGCTCTCTTGGGGTTGGGCCTCGCCGCTTACATCACAGTCCCCACAATTTACTGGCACATCTCCGATTTCATAACCGCCGCCACCGTCCCCGATTGCC CGTCTTGTTTCTGCGACTGCTCTTCCCAGCCCCTGCTTTCCCTTTCAGACGGATTGAGCATCAACACTTCATTTGCAGAATGCATGAAAAGGGACCCGGA GGTGAGCGAGGAGATGGAGAGGAGTTTCACTGGGCTACTAAAGGAGGAAGTAAAGCGGAAAGAGGCGGAAGCTCTGAGGAACCAGCAACGACCTGATGTT GCGCTGTTGGAAGCCAAGAAGATGGCATCGCAATTCCAGAAGGAAGCCGACAAGTGCAGCGCCGGAATGGACACTTGCGAGGTTGCCAGGGAGAAAGCCG ACGAAGCCCTCATCGCTCAGAGGCGCATCAGCTCCATTTGGGAGATCAGGGCTCGTCAGAGAGGATGGCGACCCTCCACAGCCATTGGCGACCTCCACTA CACCCAATAG
AA sequence Show only first row Show all	>Lus10015556 pacid=23173662 polypeptide=Lus10015556 locus=Lus10015556.g ID=Lus10015556.BGIv1.0 annot-version=v1.0 MALLGLGLAAYITVPTIYWHISDFITAATVPDCPSCFCDCSSQPLLSLSDGLSINTSFAECMKRDPEVSEEMERSFTGLLKEEVKRKEAEALRNQQRPDV ALLEAKKMASQFQKEADKCSAGMDTCEVAREKADEALIAQRRISSIWEIRARQRGWRPSTAIGDLHYTQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05070			Protein of unknown function (D...		Lus10015556 [exp]	0	1
AT1G22100			Inositol-pentakisphosphate 2-k...		Lus10024274 [exp]	3.5	0.6980
AT2G02120		PDF2.1, LCR70	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Lus10039622 [exp]	13.2	0.6369
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Lus10014490 [exp]	28.9	0.6072
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10003302 [exp]	36.9	0.5893
AT4G38380			MATE efflux family protein (.1...		Lus10023944 [exp]	44.0	0.5839
AT5G27220			Frigida-like protein (.1)		Lus10027763 [exp]	58.0	0.5588
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10005663 [exp]	58.4	0.5759
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10037092 [exp]	65.7	0.5590
AT5G59190			subtilase family protein (.1)		Lus10004683 [exp]	67.3	0.5277
AT5G14530			Transducin/WD40 repeat-like su...		Lus10032128 [exp]	70.1	0.5757

Compare expression of checked genes

Lus10015556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.