Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11930 348 / 9e-123 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2) AT4G26860 323 / 3e-113 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020039 [exp] 415 / 3e-148 AT1G11930 372 / 2e-130 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2) Lus10032558 [exp] 302 / 1e-104 AT4G26860 387 / 8e-138 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G006600 [exp] 362 / 3e-128 AT1G11930 417 / 5e-149 Predicted pyridoxal phosphate-dependent enzyme, YBL036C type (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01168 [flax] [poplar] Ala_racemase_N Alanine racemase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015557 pacid=23173656 polypeptide=Lus10015557 locus=Lus10015557.g ID=Lus10015557.BGIv1.0 annot-version=v1.0 ATGGAAGCAGCAGCCTCAGCTGCGGTCCGATTGGTGGCTGTTAGCAAGACGAAGCCAGTCTCTGTGCTTCGACAAGTCTACGACGCTGGTCATCGTTGTT TCGGCGAAAACTATGCCCAGGAACTCATAGATAAAGCTCCTCAGCTTCCGGCAGACGTAGAGTGGCACTTCATTGGCAACTTACAGAGCAACAAAGTAAA GCCTCTACTGGCTGGTGTACCCAACCTTGCCATTGTTGAAAGCGTAGATGATGACAAGATTGCGAGTCGTCTTGATCGTGTGGTTGAAAGCTTGGGAAGG AAACCGTTGAAGGTCTTTATCCAAGTGAATACCAGTGGCGAAGAATCTAAATATGGTGTTGAGCCATCAAGCTGCGTAGAACTTGCAAAGCATGTCAGTG AGAGCTGCTCAAATCTCGAGTTTTGCGGTCTGATGACAATAGGAATGCTTGACTTTTCATCCACTCCTGAAAACTTTAAGACATTAGCAAGCTGCAGAAG TGAAGTTTGCAAAGCTCTAGGTATAGAAGAAGAGCAGTGTGAGCTGTCAATGGGAATGTCCAACGACTTCGAGCAAGCGATTGAAATGGGGAGTACGAAT GTGAGAGTTGGGTCCATCATATTCGGGGCCAGGGAATATGCGAAGAAATAA
AA sequence Show only first row Show all	>Lus10015557 pacid=23173656 polypeptide=Lus10015557 locus=Lus10015557.g ID=Lus10015557.BGIv1.0 annot-version=v1.0 MEAAASAAVRLVAVSKTKPVSVLRQVYDAGHRCFGENYAQELIDKAPQLPADVEWHFIGNLQSNKVKPLLAGVPNLAIVESVDDDKIASRLDRVVESLGR KPLKVFIQVNTSGEESKYGVEPSSCVELAKHVSESCSNLEFCGLMTIGMLDFSSTPENFKTLASCRSEVCKALGIEEEQCELSMGMSNDFEQAIEMGSTN VRVGSIIFGAREYAKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11930			Predicted pyridoxal phosphate-...		Lus10015557 [exp]	0	1
AT1G11930			Predicted pyridoxal phosphate-...		Lus10020039 [exp]	2.4	0.8098
AT5G44710			unknown protein		Lus10001221 [exp]	6.7	0.7074
AT3G13845			unknown protein		Lus10015617 [exp]	8.3	0.7479
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10014798 [exp]	9.8	0.7361
AT3G62790			NADH-ubiquinone oxidoreductase...		Lus10035034 [exp]	10.3	0.7487
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10024066 [exp]	14.5	0.7292
AT1G52740		HTA9	histone H2A protein 9 (.1)		Lus10019449 [exp]	21.2	0.7200
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10042470 [exp]	32.2	0.7302
AT3G10860			Cytochrome b-c1 complex, subun...		Lus10034442 [exp]	33.1	0.6858
AT3G60450			Phosphoglycerate mutase family...		Lus10024765 [exp]	34.9	0.6716

Compare expression of checked genes

Lus10015557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.