Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62330 614 / 0 O-fucosyltransferase family protein (.1) AT1G11990 556 / 0 O-fucosyltransferase family protein (.1) AT1G29200 449 / 8e-153 O-fucosyltransferase family protein (.1.2.3) AT4G38390 234 / 2e-69 RHS17 root hair specific 17 (.1) AT4G24530 229 / 1e-67 O-fucosyltransferase family protein (.1) AT3G26370 229 / 2e-67 O-fucosyltransferase family protein (.1) AT5G65470 228 / 2e-67 O-fucosyltransferase family protein (.1) AT2G01480 221 / 3e-64 O-fucosyltransferase family protein (.1) AT1G14970 215 / 4e-62 O-fucosyltransferase family protein (.1) AT3G02250 210 / 1e-60 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029239 [exp] 449 / 2e-151 AT1G29200 698 / 0.0 O-fucosyltransferase family protein (.1.2.3) Lus10007290 [exp] 434 / 3e-145 AT1G29200 699 / 0.0 O-fucosyltransferase family protein (.1.2.3) Lus10009276 [exp] 228 / 6e-67 AT4G24530 801 / 0.0 O-fucosyltransferase family protein (.1) Lus10002653 [exp] 225 / 4e-66 AT5G65470 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10036875 [exp] 234 / 6e-66 AT3G26370 935 / 0.0 O-fucosyltransferase family protein (.1) Lus10012732 [exp] 223 / 1e-65 AT5G65470 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 220 / 5e-64 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 219 / 2e-63 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 216 / 5e-63 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G010600 [exp] 693 / 0 AT1G62330 714 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G005100 [exp] 678 / 0 AT1G62330 709 / 0.0 O-fucosyltransferase family protein (.1) Potri.011G068300 [exp] 478 / 2e-162 AT1G29200 737 / 0.0 O-fucosyltransferase family protein (.1.2.3) Potri.004G058900 [exp] 465 / 2e-157 AT1G29200 687 / 0.0 O-fucosyltransferase family protein (.1.2.3) Potri.008G185200 [exp] 236 / 3e-70 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.007G011000 [exp] 234 / 1e-69 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 233 / 6e-69 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G105800 [exp] 219 / 4e-64 AT4G24530 807 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 219 / 6e-64 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 220 / 7e-64 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10015558 pacid=23173591 polypeptide=Lus10015558 locus=Lus10015558.g ID=Lus10015558.BGIv1.0 annot-version=v1.0 ATGGTTTCCTCTTCGCCTCCTCGCCTCGCCGACCAATCCCAACCACGGCGTGTAGTTTCAGCCTCCGATGTGCTCCATTCTCCCACCCGATCCTCCTCCT CCTCCTCCTCGTTCGTCACTTCTACTCTCTCGCCAAGACGAAGCAGCAATGTCAAGTCCCGCAAGAAGAGAAGAAGAATTCATGTTATTCTCCTCCTCCT ACTTGGATTCCTCGCCATCTTCTTCTTCTTCCTCAATTGGTTTATGCTATTCCAACTTCAAGATCCTGGCGGTGCAAGTAGTGGACCTCTTCGTCTCCTT TCCTCCCTGAGCAAGGGGAAAAGATGGAAACATGGTGGTACCTACGCAAGGATGTTAGCTTTGGCTGCTCATGCCATGGCAGAAAATAATCGTGAGCCGA AAGATTTGTGGGAGGAGCCATTTGTTCCGGCCTCTGCTTGGACACCCTGTGCGGATCTGCGCGACTGGCAACGCAGTGAGGGAAACAACGGCTACATTTT GGTAACTGCAAATGGTGGCATAAATCAGCAGCGAGTAGCTGTCTGCAATGCTGTTGTTGTTGCCCGGTTACTGAATTCGACTCTTGTAATCCCTAGGTTC ATGTACAGCAGTGTCTGGAAGGATGTAAGTCAATTCAGCGATATCTATCAGCAAGTGCATTTTATAGAGTACCTGAAACCTGATATTCGGATAGTGAAGG AACTTCCCAAGGACCTACAGTCACTTGATTTGGAGGCGATTGGTAGCATTGTTACGGATTCAGACATTATGAAAGAAGCCAAGCCAAGTTTTTATTTGAA AAATATACTCCCTATACTACATAAGAACAAAGTTGTGCATTTTTTTGGATTTGGTAATCGCTTGGCATTTGATCCAATGCCATTTGAGCTTCAGAGACTT CGATGCAGATGTAATTTTCATGCGCTGTTATTTGTTCCGAAAATACAAGAAGCAGGTGCTCTGCTGCTTCGGAGGTTGCGTAATCATGCACCTTATCATG GGCGGCTGGATCATTCTCTTGTTGGTCCTTATGCAGAACTGAAAACGGGAGAAATGATGAGCAATAACACAAAAGCTTCGAGGTTTCTTTCATTGCACTT GAGGTTTGAAATTGATATGGTCGCACATTCTTTATGTGAGTACGGTGGTGGCCAAGAAGAAGCGGAAGAATTGGAAGCATATCGTGAGATCCATTTTCCT GCGCTAACACTTCTTAAAAAGACAAGGAAGCTACCCTCAGCTGCTGCACTGAGGTCAGAGGGCCTGTGTCCTTTAACCCCTGAAGAAGCAGTCCTCATGC TGTCTGCTCTTGGTTTCAACCGGAGAACCCGTGTATTTGTGGCGGGAGCAAATATTTATGGAGGTCCTTCAAGATTAGCTGCTTTGACCCATTTGTTTCC TAATTTGGTTACCAAAGAGAAGTTACTTTCAGCATCGGAACTTGAGCCATTCTCAAACTTTTCTTCTCAGTTGGCAGCACTGGACTTCATAGGATGCACG GCTTCAGATGCATTTGCTATGACAGACTCGGGAAGCCAGTTGTCGTCGTTGGTGTCTGGATACAGAGTATATTATGGAGGAGGCCGGATGCCGACAATAA GGCCGAATAAGAGGAGACTGGCTTCCATTTTCATGAAGAACTCGACCATAGAATGGAAAGTGTTTGAACAGAGAGTTAGGAAAGCAGTGAGACAGACTAA ACACGTGATTGAGAGGCCCAAAGGACGGAGCGTGTACAGGTTCCCAAGGTGTAAGGAATGTATGTGTGTTGCCGAAGAAGCAGCTGCAGCAATTGTAGTA ACAAAAAGAAAACGAAACACGTCTCATTAG
AA sequence Show only first row Show all	>Lus10015558 pacid=23173591 polypeptide=Lus10015558 locus=Lus10015558.g ID=Lus10015558.BGIv1.0 annot-version=v1.0 MVSSSPPRLADQSQPRRVVSASDVLHSPTRSSSSSSSFVTSTLSPRRSSNVKSRKKRRRIHVILLLLLGFLAIFFFFLNWFMLFQLQDPGGASSGPLRLL SSLSKGKRWKHGGTYARMLALAAHAMAENNREPKDLWEEPFVPASAWTPCADLRDWQRSEGNNGYILVTANGGINQQRVAVCNAVVVARLLNSTLVIPRF MYSSVWKDVSQFSDIYQQVHFIEYLKPDIRIVKELPKDLQSLDLEAIGSIVTDSDIMKEAKPSFYLKNILPILHKNKVVHFFGFGNRLAFDPMPFELQRL RCRCNFHALLFVPKIQEAGALLLRRLRNHAPYHGRLDHSLVGPYAELKTGEMMSNNTKASRFLSLHLRFEIDMVAHSLCEYGGGQEEAEELEAYREIHFP ALTLLKKTRKLPSAAALRSEGLCPLTPEEAVLMLSALGFNRRTRVFVAGANIYGGPSRLAALTHLFPNLVTKEKLLSASELEPFSNFSSQLAALDFIGCT ASDAFAMTDSGSQLSSLVSGYRVYYGGGRMPTIRPNKRRLASIFMKNSTIEWKVFEQRVRKAVRQTKHVIERPKGRSVYRFPRCKECMCVAEEAAAAIVV TKRKRNTSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62330			O-fucosyltransferase family pr...		Lus10015558 [exp]	0	1
AT5G04420			Galactose oxidase/kelch repeat...		Lus10037933 [exp]	1.4	0.7524
AT3G04950			unknown protein		Lus10000934 [exp]	1.4	0.7778
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10040029 [exp]	2.4	0.7220
AT1G04900			Protein of unknown function (D...		Lus10016677 [exp]	5.5	0.7090
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10036961 [exp]	7.3	0.6245
AT4G05090			Inositol monophosphatase famil...		Lus10006739 [exp]	8.0	0.6726
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Lus10020119 [exp]	14.1	0.6945
AT5G58200			Calcineurin-like metallo-phosp...		Lus10016863 [exp]	16.4	0.6528
AT3G58140			phenylalanyl-tRNA synthetase c...		Lus10028547 [exp]	21.4	0.6602
AT5G36260			Eukaryotic aspartyl protease f...		Lus10020201 [exp]	37.9	0.6483

Compare expression of checked genes

Lus10015558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.