Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62340 902 / 0 ALE1 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) AT2G19170 567 / 0 SLP3 subtilisin-like serine protease 3 (.1) AT4G30020 564 / 0 PA-domain containing subtilase family protein (.1) AT4G20430 541 / 0 Subtilase family protein (.1.2) AT5G44530 533 / 7e-178 Subtilase family protein (.1) AT1G30600 504 / 8e-167 Subtilase family protein (.1) AT4G34980 316 / 9e-96 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 303 / 1e-90 Subtilase family protein (.1) AT1G32960 299 / 2e-89 ATSBT3.3 Subtilase family protein (.1) AT1G32950 295 / 5e-88 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040146 [exp] 585 / 0 AT2G19170 655 / 0.0 subtilisin-like serine protease 3 (.1) Lus10000960 [exp] 585 / 0 AT4G30020 658 / 0.0 PA-domain containing subtilase family protein (.1) Lus10001006 [exp] 574 / 0 AT2G19170 629 / 0.0 subtilisin-like serine protease 3 (.1) Lus10006973 [exp] 550 / 0 AT4G30020 1334 / 0.0 PA-domain containing subtilase family protein (.1) Lus10023389 [exp] 538 / 2e-179 AT4G20430 1173 / 0.0 Subtilase family protein (.1.2) Lus10038416 [exp] 536 / 1e-178 AT5G44530 1169 / 0.0 Subtilase family protein (.1) Lus10001310 [exp] 481 / 1e-158 AT4G30020 1258 / 0.0 PA-domain containing subtilase family protein (.1) Lus10008060 [exp] 483 / 4e-158 AT4G20430 1112 / 0.0 Subtilase family protein (.1.2) Lus10011018 [exp] 401 / 4e-129 AT2G19170 445 / 3e-146 subtilisin-like serine protease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G010700 [exp] 693 / 0 AT1G62340 631 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Potri.001G151100 [exp] 608 / 0 AT2G19170 615 / 0.0 subtilisin-like serine protease 3 (.1) Potri.006G076200 [exp] 581 / 0 AT2G19170 1342 / 0.0 subtilisin-like serine protease 3 (.1) Potri.018G143400 [exp] 579 / 0 AT4G30020 1338 / 0.0 PA-domain containing subtilase family protein (.1) Potri.001G440300 [exp] 527 / 2e-175 AT4G20430 1107 / 0.0 Subtilase family protein (.1.2) Potri.011G155400 [exp] 520 / 1e-172 AT4G20430 1143 / 0.0 Subtilase family protein (.1.2) Potri.001G450600 [exp] 336 / 3e-103 AT1G32960 772 / 0.0 Subtilase family protein (.1) Potri.014G074600 [exp] 325 / 4e-99 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.004G161400 [exp] 323 / 2e-98 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Potri.007G045100 [exp] 320 / 2e-97 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10015559 pacid=23173607 polypeptide=Lus10015559 locus=Lus10015559.g ID=Lus10015559.BGIv1.0 annot-version=v1.0 ATGGGAAGAGGTAAGGCCGCCGTTGCTCTGCTTGTTGTTGTGGTGGCCCTAACGTATGTGGTCGGACTGCGAAGCTCTTCTTCTGTACAAGACCAGCAAT CTTTATATCTGGTGTTAATGGAAGGAGAACAGCCGGCTAGGAGTAACAATGAGCTGACCGCGAACCAGCTAGGCAAGTCTCACGATCAACTTCTGCAGAC CACCCTCGGAACCGGAAACTACAACAAGCTCTACAGTTTCAAACACGTTATCAATGGATTTGCTGTACGAACTACCACTTCTCAGGTTCAGAGACTGAAG GACTCCCCTTCGGTTAAGGTGGTGGAGAGGGATCGAGGTGCCAAATTGATGACAACCTATACTCCTCAGTTCCTTGGATTACAAGGAACTATCGCTTTTA CTGCTGATAATGATCATGGGACACCAGCAGTAGGAAATGATGGCACGAGCAATGGCGAGGGGGTAATCATTGGGTTTGTAGACACGGGGATCGATCCAAC GCATCCTAGTTTTGCCTACGATCCGGAGGATGACCTCATTAACGAGAAGCATCAACGATTTTCCGGTGCTTGTGAGACGGGACCTGCATTCCCACCCAGC TCTTGCAACGGGAAGATTGTGTCGGCTAGATTCTTCTCAGCTGGGGCTCAGTCCATCGCTACTCTCAACACTTCCCTTGATTTCCTTTCTCCTTTTGATG CTGTTGGGCACGGCACGCACGTGGCATCAACTGCTGCTGGGAACGCCGACATTCCAGTCGTGGTAAATGGCTTCCATTATGGACGAGCCAGTGGGATGGC ACCTCGTGCCAGAATCGCAGTTTACAAGGCTGTATATCCAACTGTAGGGACCCTGGCTGATGTGATTGCTGCAATTGATCAAGCCGTCAAGGATAGAGTA GACATATTGACAGTGTCAGTCGGACCAGATACTCCGCCAGAAGATACAACCGTCACATTCCTAAGCGTGTTCGATATAGCCATGCTATACGCTCGACGAA GTGGAATATTCGTCGTGCAGGCAGCTGGAAACCTAGGACCTGACCCTTCCACAGTTGTCTCGTACAGCCCCTGGGCGATGGCTGTAGCTGCTTGCAGCAC TGACCGTACTTACTCGGGCTCTCTCGTCCTCGGTGATGGCCAACTTGTTCGCGGCATTGGTTTATCAGCACCAACATTGTCGTCGAGGCTGGTGTTGGCT AGGGATGCTATGAAGCCGAACCGATCATTTCCAGTCTCCTACGGCGAGGAATGCCAGCATCCTGATGCATTGGAACCTCCCCTGGTCCAAGGTAGCATAG TTGTATGCACCTTTTCGGGTGGTTTCTACAACCAAACTTCCAGTGTGGCGGCCATCATTGACACTGCAAGACAGTTGGGATTCCGGGGCTTTGCTCTTGC TGCTCATCCCACCTACGGAGATTTCGTCGCGGAACCTATTCCGTTTGATGTTCCTGCAGCAGGCATCATTATTCCTAAAGTTGCAGACACCCAGATTGTG ATGAAGTATTATGAACAACACATCAGCAGAGATACGAAGGGACAAGTGGCAAGATTCAATGGACGAGCTCGTATAGGAGAAGGTAGAGTTTCGAATTTCG GTGGCAGAGCCCCTATTGTTAGCAGATTCTCTTCAAGGGGGCCGGATTATGCTACTGTCGGCCAGAGCCATCGGCCAACAGATGTGCTGAAGCCAGACAT TCTTGCACCAGGTCATCAAGTATGGGCAGCTTGGAGTCCCCTAAGTGCCTTGGAACCACTTCTAGCAGGATACAGTTTCGCACTGATGTCAGGAACGAGC ATGGCAACACCTCATGTTGCGGGAATAGCGGCACTCATCAGGCAACACAATCCCTCCTGGAATCCTTCCATGATTGCATCAGCCATTACCACCACAGCCT CCAAGTATGACTCCCACGGTGACCTCATTTCGGCTGAAGGTCCTGGCAACCTCTATACCATTCACCCTGGCACCTACTTTGATTTTGGTGCAGGCCTCAT TAATCCTGCTCGTGCCCTCGACCCGGGCCTCGTCTTGTCATCAGAGTTTGAAGACTACATAGACTTCCTGTGTTCTCTACCGGATATTGATTGGGTGAAG ATAAGGGCTGCTACTGGAGTGTCTTGCCATCAACAGCTGACGCACCCGGCCAATCTCAACATCCCATCAGTAACCATATCTGCATTACGATTTGGACACC CAATACAATTGCAGCGACGATTCACGAGTGTCGGCATCAAACCTGAGACATACCTCTGCTACGTATTGTCCCCGAATGGAACCACAGTCAAACTCTCTCC AACTTGGTTCAGAATAGCCCCCCTTCAAACTCAAGACATCCGCATTGAGCTCCATGCCACTCAGAAGGAGGCAGTGAACGCATTCAGCTTTGGTGAAATC GTACTAACTGGAAGTTTGGATCATATTGTCCGACTTCCTTTATCAGTTCTGCTAATTTCTGCAACATCCTAA
AA sequence Show only first row Show all	>Lus10015559 pacid=23173607 polypeptide=Lus10015559 locus=Lus10015559.g ID=Lus10015559.BGIv1.0 annot-version=v1.0 MGRGKAAVALLVVVVALTYVVGLRSSSSVQDQQSLYLVLMEGEQPARSNNELTANQLGKSHDQLLQTTLGTGNYNKLYSFKHVINGFAVRTTTSQVQRLK DSPSVKVVERDRGAKLMTTYTPQFLGLQGTIAFTADNDHGTPAVGNDGTSNGEGVIIGFVDTGIDPTHPSFAYDPEDDLINEKHQRFSGACETGPAFPPS SCNGKIVSARFFSAGAQSIATLNTSLDFLSPFDAVGHGTHVASTAAGNADIPVVVNGFHYGRASGMAPRARIAVYKAVYPTVGTLADVIAAIDQAVKDRV DILTVSVGPDTPPEDTTVTFLSVFDIAMLYARRSGIFVVQAAGNLGPDPSTVVSYSPWAMAVAACSTDRTYSGSLVLGDGQLVRGIGLSAPTLSSRLVLA RDAMKPNRSFPVSYGEECQHPDALEPPLVQGSIVVCTFSGGFYNQTSSVAAIIDTARQLGFRGFALAAHPTYGDFVAEPIPFDVPAAGIIIPKVADTQIV MKYYEQHISRDTKGQVARFNGRARIGEGRVSNFGGRAPIVSRFSSRGPDYATVGQSHRPTDVLKPDILAPGHQVWAAWSPLSALEPLLAGYSFALMSGTS MATPHVAGIAALIRQHNPSWNPSMIASAITTTASKYDSHGDLISAEGPGNLYTIHPGTYFDFGAGLINPARALDPGLVLSSEFEDYIDFLCSLPDIDWVK IRAATGVSCHQQLTHPANLNIPSVTISALRFGHPIQLQRRFTSVGIKPETYLCYVLSPNGTTVKLSPTWFRIAPLQTQDIRIELHATQKEAVNAFSFGEI VLTGSLDHIVRLPLSVLLISATS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62340		ALE1	ABNORMAL LEAF-SHAPE 1, ABNORMA...		Lus10015559 [exp]	0	1
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10016115 [exp]	1.7	0.8510
AT4G18380			F-box family protein (.1.2)		Lus10013431 [exp]	2.2	0.8816
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10033548 [exp]	2.4	0.8546
					Lus10015383 [exp]	3.2	0.8126
AT4G02210			unknown protein		Lus10027531 [exp]	6.6	0.8106
AT5G04620		BIO4, ATBIOF	biotin 4, biotin F (.1.2)		Lus10009662 [exp]	6.7	0.8366
AT5G24600			Protein of unknown function, D...		Lus10015590 [exp]	8.0	0.8034
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10026130 [exp]	8.0	0.8391
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030085 [exp]	10.9	0.8221
AT5G62140			unknown protein		Lus10038887 [exp]	13.0	0.8312

Compare expression of checked genes

Lus10015559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.