Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11790 409 / 3e-142 AtADT1, ADT1 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) AT3G07630 365 / 2e-125 AtADT2, ADT2 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) AT1G08250 360 / 1e-122 AtADT6, ADT6 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) AT2G27820 357 / 3e-121 ADT3, PD1 arogenate dehydratase 3, prephenate dehydratase 1 (.1) AT5G22630 326 / 3e-109 ADT5 arogenate dehydratase 5 (.1) AT3G44720 324 / 2e-108 ADT4 arogenate dehydratase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020035 [exp] 679 / 0 AT1G11790 426 / 5e-149 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10031547 [exp] 377 / 7e-130 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10015130 [exp] 376 / 1e-129 AT1G11790 434 / 4e-152 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10018128 [exp] 350 / 2e-118 AT3G07630 456 / 5e-160 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10020549 [exp] 349 / 5e-118 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10009396 [exp] 348 / 9e-118 AT1G08250 607 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10043369 [exp] 345 / 2e-116 AT1G08250 599 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10019526 [exp] 345 / 3e-116 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10036135 [exp] 340 / 2e-115 AT3G07630 449 / 7e-158 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004700 [exp] 472 / 7e-167 AT1G11790 527 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.004G013400 [exp] 464 / 1e-163 AT1G11790 513 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.008G195500 [exp] 374 / 2e-128 AT3G07630 504 / 2e-179 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Potri.004G188100 [exp] 353 / 2e-119 AT1G08250 612 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Potri.009G148800 [exp] 352 / 6e-119 AT1G08250 606 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain CL0177 [flax] [poplar] PBP PF00800 [flax] [poplar] PDT Prephenate dehydratase
Representative CDS sequence Show only first row Show all	>Lus10015561 pacid=23173613 polypeptide=Lus10015561 locus=Lus10015561.g ID=Lus10015561.BGIv1.0 annot-version=v1.0 ATGGCATTGGGAGCTGTGGAGTCTATCTGGGTCGGCGGCCTATTCAACTCTCATTCCAATCCGCTGCTCTCTGATTATTCGGGGCCTTCCAGACTTGTTG CTGTGGATTTCAGGTGCCGGAAATGGCAATGCTGTTGGTCCTCAGTTGTTCTTCCTCACACTACCCTCACTCCTGTCGATGACGACAAGAAGCCCCTCGC TCCTCAACCTAATCCTCCTACCCCTACTGCTGATTCCAAGGATATTATCGTCTCCAAGGGATTTCACAGAGACCTCAATTTTCTTCCCAAACCGTTGAGT GCAACGGACGCTTCAAACTCTACTGATGGTGGTCCAAAAGTGAGGGTTGCATATCAGGGAATTGCAGGTGCATATAGTGAGGCTGCTGCACTAAAGGCTT ACCCTGGTTGTGAAACAGTACCATGTTATGAATTTGAAGCTGCGTTCAAGGCAGTAGAACTCTGGCTAGTGGACAAAGCAGTCCTCCCCATTGAGAATTC AGTTGGCGGAAGCATCCATCGTAACTATGACTTGCTCCTTCGTCATAGGCTTCATATTGTAGGAGAGGTACAGATGGAAGTTAATCACTGCCTTTTGACA CTGCCTGGTGTGAAAAAGGAGGAACTCAAACGTGTACTAAGCCACCCTCAAGCTCTTGCTCAGTGTGAGACAATATTGAGCAGTTTGAATATTATGAGAG TCAATTCTGAGGATACTGCCGGTGCTGCTCAGGATGACGCCGACAACATTACTCGCTTCCTTATACTTGCCCGAGAGCCTATCATTCCAGGGACTGACAA GCCATATAGGACGAGCATTGTTTTCACCCTTGAAGAAGGTCCAGGTGTGCTGTTCAAAGCACTGGCAGTGTTTGCTTTGAGGGACATCAGTTTAACAAAG ATAGAGAGCCGGCCACAAAGAAGGCGTCCGGTGAGAGTTGTGGATGATTCTAACAAGGGCAGCGCCAAGTACTTTGACTACCTGTTTTACATAGACTTTG CAGCATCAATGGCGGAGCACAGGGCACAGCATGCACTGGGACACTTACAGGAGTTTGCTAAGTTCATACGTGTTCTTGGTAGCTATCCAATGGATACCAT CAGTTAA
AA sequence Show only first row Show all	>Lus10015561 pacid=23173613 polypeptide=Lus10015561 locus=Lus10015561.g ID=Lus10015561.BGIv1.0 annot-version=v1.0 MALGAVESIWVGGLFNSHSNPLLSDYSGPSRLVAVDFRCRKWQCCWSSVVLPHTTLTPVDDDKKPLAPQPNPPTPTADSKDIIVSKGFHRDLNFLPKPLS ATDASNSTDGGPKVRVAYQGIAGAYSEAAALKAYPGCETVPCYEFEAAFKAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVGEVQMEVNHCLLT LPGVKKEELKRVLSHPQALAQCETILSSLNIMRVNSEDTAGAAQDDADNITRFLILAREPIIPGTDKPYRTSIVFTLEEGPGVLFKALAVFALRDISLTK IESRPQRRRPVRVVDDSNKGSAKYFDYLFYIDFAASMAEHRAQHALGHLQEFAKFIRVLGSYPMDTIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Lus10015561 [exp]	0	1
AT4G11980		ATNUDX14, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10006685 [exp]	4.2	0.8731
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10019997 [exp]	4.9	0.8907
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	6.1	0.9012
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10019438 [exp]	6.9	0.8628
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10019139 [exp]	7.9	0.8914
AT2G40070			unknown protein		Lus10040188 [exp]	8.2	0.8388
AT4G19420			Pectinacetylesterase family pr...		Lus10033304 [exp]	8.9	0.8828
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10015526 [exp]	10.0	0.8735
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10002442 [exp]	14.5	0.8573
AT3G02710			ARM repeat superfamily protein...		Lus10010958 [exp]	16.2	0.8527

Compare expression of checked genes

Lus10015561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.