Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14770 65 / 4e-11 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G68030 54 / 1e-07 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026308 [exp] 65 / 4e-11 AT1G01150 63 / 6e-11 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10012209 [exp] 65 / 1e-10 AT1G68030 97 / 5e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10011320 [exp] 61 / 1e-09 AT1G68030 84 / 2e-17 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G005600 [exp] 60 / 3e-09 AT5G03780 94 / 1e-20 TRF-like 10 (.1) Potri.016G053300 [exp] 52 / 8e-07 AT1G68030 115 / 7e-28 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G054401 [exp] 49 / 5e-06 AT1G68030 104 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015562 pacid=23173676 polypeptide=Lus10015562 locus=Lus10015562.g ID=Lus10015562.BGIv1.0 annot-version=v1.0 ATGGCGGAAGATAGATCACCGGCGACAATTGCGTGGCTTTGGACTATCGAGTACCTTGCAACCCTCAAAGACTTCGATTCATCACTCTTGAACGAATTAG TTGAGTCAGCTCCTGAAGATGTGAGAAAAGCTGCCAATGAAATTTTCCAGTCTCCCCTTCCTACCAAGTGTTCTTTAGAGCTGATTAAAGAGCAACTTGT GGGAGGCTTGATTTCGGATGATTTACTGAAGAAGCGGAGTGGTATCTTTACTGAAGGAGTTAATTCTGATGGAAGTAAAGTAGCTGAAGGTGAATCTATC CTTAATGAAATTTCTGGTGAGCAATTGAATCAACAACCAGCCACAGCTGAAGTAGACGATCATTCAGTTCGTATTGGTGACGGAGATCTTAATGTTCAAA CGGCTGAGTTGATAGACGTTGATAGTGTCCTCCTGGAGACTTCTGATCCCAATGCTGGAATGGTAGATAATACTCAACAACCATCCACTGACAAGAAAGA GCTTGCTGTTGAAACTGGTGGTGGAGATAATCTGCAGGAAACCAAGTCAATAGAGGAGGAAGAAGAAGAAGGGGATGATGGTGATGTTGTCCTTATGGAG ATTCCTGATGCCAATGTCAATGATAGGGTGCAAAGTAATAATCAACCATCCACTTGCGAGACTCAGCATGCGGTTGAAACTGGATGTGAGGATATTAATT TGCAGGGAACTGAGCCAACACCAGATGATGATATTGTCCTTTTGGATGCACCTGTTGCCAATGCGAACGGTGAATTGGACAATAGTCATCAACAACCATC TACTGGTGGGACAGAACACATAGTTGAAACTAGTGGAACAAATCGTGATGGTTCTGCACGCAAGGAGGGCTCCAATACTGATGCCGATGACAGTGTCCGG AACTGCCAGCAACCTTCTAATGCTAAGCTAGATCATCCTTCTGAAAATGGAGCTCATGCCAATAACGATCAGGTGAAATCAGGTCGAAACAAGCTTACTG AAAGCAATCACGATGGTTCCATTTCTGCAAAGGCTTCTGATGCTTATGCATATAATCAAACACAGAATCATGAAGCATCATCAAATAGGGAGAGGGAGCA TCATCATCCAGAGAGAAGTAGTAACGAGAATGGAGAAGAGCGGGCTAGTACTAGTAGGAAGAGGACGATGAGTGATTATCTCGAGGCTCGACAGTCATCG GTTCCAGTGGACGCATCAAATTTTGTGGAGTCAAATCTGTGTGGGAGGTGTCACAGACCTGGTGCATTGTTGGAATGTGGTTCTGCTAATTGCCCAATGA TGATCCATAGAGACTGCCTAGGTTTTGATGCAAGCACCGTGGAGGCAAGAGACTTCTACTGCCCACTCTGTGCACACATTCGAGCTGTTGCAGAACTTCA TGAAGCTCAGAGGCGTGCTGCTTTAGCGCAAAAGAATTTAACTTTGTTTGTTGACCTGTCGATGCGCAGCTGTGAGAACAATTCCGACTTGGGTGTCTTT CGGAAGTGA
AA sequence Show only first row Show all	>Lus10015562 pacid=23173676 polypeptide=Lus10015562 locus=Lus10015562.g ID=Lus10015562.BGIv1.0 annot-version=v1.0 MAEDRSPATIAWLWTIEYLATLKDFDSSLLNELVESAPEDVRKAANEIFQSPLPTKCSLELIKEQLVGGLISDDLLKKRSGIFTEGVNSDGSKVAEGESI LNEISGEQLNQQPATAEVDDHSVRIGDGDLNVQTAELIDVDSVLLETSDPNAGMVDNTQQPSTDKKELAVETGGGDNLQETKSIEEEEEEGDDGDVVLME IPDANVNDRVQSNNQPSTCETQHAVETGCEDINLQGTEPTPDDDIVLLDAPVANANGELDNSHQQPSTGGTEHIVETSGTNRDGSARKEGSNTDADDSVR NCQQPSNAKLDHPSENGAHANNDQVKSGRNKLTESNHDGSISAKASDAYAYNQTQNHEASSNREREHHHPERSSNENGEERASTSRKRTMSDYLEARQSS VPVDASNFVESNLCGRCHRPGALLECGSANCPMMIHRDCLGFDASTVEARDFYCPLCAHIRAVAELHEAQRRAALAQKNLTLFVDLSMRSCENNSDLGVF RK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14770			RING/FYVE/PHD zinc finger supe...		Lus10015562 [exp]	0	1
AT5G06350			ARM repeat superfamily protein...		Lus10004194 [exp]	2.0	0.9029
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10020784 [exp]	2.4	0.8891
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Lus10029774 [exp]	2.4	0.8747
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	2.6	0.9068
AT2G19490			recA DNA recombination family ...		Lus10021585 [exp]	5.9	0.8419
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10006221 [exp]	6.2	0.8534
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10022276 [exp]	7.3	0.8645
AT3G57000			nucleolar essential protein-re...		Lus10032053 [exp]	8.4	0.8668
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10013733 [exp]	9.9	0.8617
AT1G60560			SWIM zinc finger family protei...		Lus10025765 [exp]	10.6	0.8461

Compare expression of checked genes

Lus10015562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.