Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49430 315 / 3e-108 SRP34A, SR34a, At-SR34a Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) AT1G09140 250 / 2e-83 ATSRP30.1, ATSRP30.2, SR30, At-SR30 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) AT1G02840 249 / 8e-83 ATSRP34, SR1, SR34, At-SR34 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT4G02430 234 / 6e-77 SR34b, At-SR34b Serine/Arginine-Rich Protein Splicing Factor 34b, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G61860 65 / 3e-12 ATRSP31, At-RS31 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G25500 63 / 2e-11 ATRSP40, AT-SRP40, ATRSP35, RS40, At-RS40 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) AT5G52040 62 / 6e-11 ATRSP41, RS41, At-RS41 arginine/serine-rich splicing factor 41, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G53500 59 / 4e-10 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT2G37340 59 / 4e-10 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) AT2G46610 59 / 5e-10 RS31a, At-RS31a arginine/serine-rich splicing factor 31a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032940 [exp] 366 / 3e-128 AT3G49430 328 / 7e-113 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Lus10003606 [exp] 263 / 2e-88 AT1G02840 299 / 5e-102 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10007869 [exp] 260 / 6e-87 AT1G02840 308 / 1e-105 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10020656 [exp] 245 / 4e-80 AT1G02840 297 / 2e-100 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10029885 [exp] 213 / 2e-66 AT1G02840 253 / 2e-81 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10008218 [exp] 199 / 3e-62 AT1G02840 228 / 3e-73 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10030374 [exp] 132 / 5e-38 AT1G02840 147 / 8e-45 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10030226 [exp] 70 / 7e-14 AT3G61860 320 / 8e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10005986 [exp] 65 / 3e-12 AT3G61860 300 / 3e-103 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G004600 [exp] 329 / 2e-114 AT3G49430 303 / 1e-103 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Potri.012G021800 [exp] 320 / 3e-110 AT3G49430 317 / 2e-108 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Potri.013G015500 [exp] 260 / 8e-87 AT1G09140 263 / 7e-88 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) Potri.005G024600 [exp] 253 / 4e-84 AT1G09140 258 / 6e-86 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) Potri.014G129900 [exp] 251 / 2e-83 AT1G02840 272 / 5e-91 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.002G205025 [exp] 250 / 7e-83 AT1G02840 272 / 1e-90 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.014G101800 [exp] 72 / 7e-15 AT3G61860 319 / 9e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G133600 [exp] 71 / 4e-14 AT4G25500 316 / 2e-106 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.015G135800 [exp] 69 / 2e-13 AT4G25500 322 / 5e-108 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) Potri.002G175000 [exp] 68 / 2e-13 AT3G61860 291 / 8e-100 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10015564 pacid=23145915 polypeptide=Lus10015564 locus=Lus10015564.g ID=Lus10015564.BGIv1.0 annot-version=v1.0 ATGAGTGGCCGCTTTTCTCGAACAATCTATTGTGGCAACCTGCCAGCAGATATCAGAGAATCCGAGGTTGAAGACTTGTTCCACAAGTATGGTAGGATAC TGGATATCGAGCTAAAAATTCCTCCACGCCCTCCATGTTATTGTTTTGTTGAGTTTGAAAATTCTCGAGATGCTGAAGATGCAATCAGGGGACGTGATGG GTACAATTTTGATGGCTGTCGGTTGAGGGTTGAGCTTGCTCATGGTGGAAGGGCACCATCTTCAAACGATAGACGTGGCGGTGGCTATGGAGGTGGCAGG GGCCAGCATGGAACTTCCCGACATTCTGAGTATCGAGTAATCGTCCGTGGACTCCCGTCTTCTGCTTCTTGGCAAGATTTGAAGGATCACATGAGGAAAG CTGGTGATGTTTGCTTTGCTGAAGTTTCTCGTGATGCTGATGGTACTTTTGGGATTGTTGACTATACCAACCATGATGACATGAAATATGCTATTCGCAA ACTTGATGACACCGAGTTTAGAAACCCTTGGGTCAGAGGTTACATTCGGGTGAAGAAGTATGAGAGGAGGACACCATCAAGAAGCCCAAGTAGAAGCCGT AGCAGAAGCAGGAGTCCACCAAGAAGGGGCAGAAGCAAATCCTTGGAACGATCAGCCTCAAAATCCATATCAAGATCTAGATCAGCCTCACCTGTTACAT CACCCAGAGGTAGATCGCGGTCAAGGTCTAGGTCTGCATCCCCTGAAAAGGCTCGCTCTGGAAGTGGCTGA
AA sequence Show only first row Show all	>Lus10015564 pacid=23145915 polypeptide=Lus10015564 locus=Lus10015564.g ID=Lus10015564.BGIv1.0 annot-version=v1.0 MSGRFSRTIYCGNLPADIRESEVEDLFHKYGRILDIELKIPPRPPCYCFVEFENSRDAEDAIRGRDGYNFDGCRLRVELAHGGRAPSSNDRRGGGYGGGR GQHGTSRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDADGTFGIVDYTNHDDMKYAIRKLDDTEFRNPWVRGYIRVKKYERRTPSRSPSRSR SRSRSPPRRGRSKSLERSASKSISRSRSASPVTSPRGRSRSRSRSASPEKARSGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Lus10015564 [exp]	0	1
AT2G16940			Splicing factor, CC1-like (.1....		Lus10034466 [exp]	2.0	0.9161
AT5G64200		ATSC35, At-SC35	ARABIDOPSIS THALIANA ORTHOLOG ...		Lus10023802 [exp]	2.4	0.9116
AT5G27620		CYCH;1	cyclin H;1 (.1)		Lus10037811 [exp]	4.7	0.9194
AT5G55300		MGO1, TOP1BETA,...	TOPOISOMERASE 1, MGOUN 1, DNA ...		Lus10043175 [exp]	6.6	0.9088
AT1G60900			U2 snRNP auxilliary factor, la...		Lus10037299 [exp]	6.6	0.8834
AT2G25970			KH domain-containing protein (...		Lus10013531 [exp]	8.1	0.9052
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006305 [exp]	8.8	0.8912
AT3G63510			FMN-linked oxidoreductases sup...		Lus10016407 [exp]	10.1	0.8913
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10023091 [exp]	12.3	0.8755
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10015039 [exp]	19.0	0.8874

Compare expression of checked genes

Lus10015564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.