Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64720 95 / 3e-23 CP5 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G54170 61 / 5e-11 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT4G14500 55 / 6e-09 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT3G23080 52 / 7e-08 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032938 [exp] 124 / 1e-33 AT1G64720 437 / 2e-152 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10033247 [exp] 85 / 2e-19 AT1G64720 523 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10008281 [exp] 62 / 8e-12 AT1G64720 374 / 1e-130 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10041166 [exp] 46 / 8e-06 AT4G14500 607 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10021883 [exp] 45 / 1e-05 AT4G14500 605 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G450100 [exp] 92 / 5e-22 AT1G64720 489 / 6e-173 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.012G021400 [exp] 90 / 4e-21 AT1G64720 478 / 2e-168 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.011G151500 [exp] 88 / 1e-20 AT1G64720 515 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.015G005000 [exp] 88 / 2e-20 AT1G64720 474 / 1e-166 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.010G076500 [exp] 51 / 8e-08 AT4G14500 571 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.008G162600 [exp] 50 / 2e-07 AT4G14500 581 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015566 pacid=23145919 polypeptide=Lus10015566 locus=Lus10015566.g ID=Lus10015566.BGIv1.0 annot-version=v1.0 ATGGGGATTCCATGGGAAATCTCGAAGCTCGGTATTCGACAGGGAATGTGGGCATCGGTCAAGAAGATCGAGCCAGGGCTACTTGCTTACCAAACGGCCA GGGCATCATCTGATTCAGAAGCAGGAAGTTCCGAAGTTGAAAGCTCAGGAAGGAACTTATCAAAGGTTTTGATTATAGGTGCAGCTGTTGCCCTTGCATG CAGTATCGACCAGGGGCTAGTGGGTAAAGCTTGTATTTTTGGGATAGCTAGAAGGTTAGGGAGTTTCAGGAAGAGATCTGTAAACCCCATTGCATTAGCT GATGATGATAGTGAAGACAACATAACCTTGGCAGAAGTGAAGCGTACCAAACACCAGCTGATGCCCTCTCAGAATAAACCTCCAACTTGGGTTGCTTCCC CACTTGTGAAAGTGAAACAAGAACGTTTTGCTGACAATTCAACATCAGCAGTCCCCAACGACAAACCTTCTCCGGCGCAAAAAACTCCAGCTGGGCGCAT TCCGCAGAACCCATCTCACCAAACCGAGCAGCCCATCAAGACTGCTCAAAAACGCCTTTTCCCTGTCTAG
AA sequence Show only first row Show all	>Lus10015566 pacid=23145919 polypeptide=Lus10015566 locus=Lus10015566.g ID=Lus10015566.BGIv1.0 annot-version=v1.0 MGIPWEISKLGIRQGMWASVKKIEPGLLAYQTARASSDSEAGSSEVESSGRNLSKVLIIGAAVALACSIDQGLVGKACIFGIARRLGSFRKRSVNPIALA DDDSEDNITLAEVKRTKHQLMPSQNKPPTWVASPLVKVKQERFADNSTSAVPNDKPSPAQKTPAGRIPQNPSHQTEQPIKTAQKRLFPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10015566 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	3.2	1.0000
					Lus10001326 [exp]	6.5	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	7.3	1.0000
					Lus10014857 [exp]	8.9	1.0000
					Lus10026755 [exp]	9.2	1.0000
					Lus10009206 [exp]	11.0	1.0000
AT4G17260			Lactate/malate dehydrogenase f...		Lus10028931 [exp]	11.2	1.0000
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008511 [exp]	12.4	1.0000
					Lus10016593 [exp]	13.1	1.0000
AT2G43610			Chitinase family protein (.1)		Lus10020253 [exp]	14.8	1.0000

Compare expression of checked genes

Lus10015566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.