Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24500 91 / 4e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032937 [exp] 194 / 2e-62 AT5G24500 47 / 9e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G005100 [exp] 124 / 3e-33 AT5G24500 68 / 2e-12 unknown protein Potri.012G021300 [exp] 123 / 9e-33 AT5G24500 81 / 6e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015567 pacid=23145901 polypeptide=Lus10015567 locus=Lus10015567.g ID=Lus10015567.BGIv1.0 annot-version=v1.0 ATGAATAGTTACCCTCATTTCTCCGTTCCTTACTCACTAGTCACTACTGCTGAAACTCTGCCCTTTCCGTCATCTTTCCGACCAACTTCCCACCTCCCTT TACTCACAATTCAATCACTATTCCTCGAAGCCTATCCAATGGCGTGCTCAGTCTCCGCCGAGAAGTCCACTTCAAACTGGCTGGACCGCCTCCGCACCAC CAAAGGCTTCCCCCCCTCCGGGGACCTCACCCTAGATCACTTCCTCGCCAATCCCACCACCGAACAGCCTCCCGATTCCCCTAAACCCGATGTTTCCACC TCCAGTTCAAACATCAACTCATCCAACTCCGTCGAGATTTCCGCCCAAATTGGACGAGAAAGGGATTGGTTCGGCGTCATGAACCATGTCCTCTCCGATC TCTTCGTCATGGGCGGCGGCCCCACCACATCCATCTCCGGGAGAAAGACCGCCCGAAAACAGACGAACCCTAAGAGTTTCCCGCTTCCTCCTCCGGCGGA AGACGACAACAAAACTGTGGCCGTCGCTTCTTCTTTCAATTCCGACCACAACTCCAACATTAACGATGATTGCGGCGGCGGTGACGACGATGACGTGGAG GAGGAGGAGGAGGAGGATAAGTATAGGGACGATCACTGCCGTACCGGCGATGAAGAGTTGAGAGGTTACTCACGGAGTGAAGTGACGGTGATTGATACAA GCTACGAGGTGTGGAAGTCTGACAAGCTGGTGTTTAGGAGGAAGAATGATTGGAAAGTTAGAGACAAGAAAGGCAGGTCATGGCTGTCTTCTGCTGCCAC TAGGAAGAAGAAGAAAAAGCAGTGA
AA sequence Show only first row Show all	>Lus10015567 pacid=23145901 polypeptide=Lus10015567 locus=Lus10015567.g ID=Lus10015567.BGIv1.0 annot-version=v1.0 MNSYPHFSVPYSLVTTAETLPFPSSFRPTSHLPLLTIQSLFLEAYPMACSVSAEKSTSNWLDRLRTTKGFPPSGDLTLDHFLANPTTEQPPDSPKPDVST SSSNINSSNSVEISAQIGRERDWFGVMNHVLSDLFVMGGGPTTSISGRKTARKQTNPKSFPLPPPAEDDNKTVAVASSFNSDHNSNINDDCGGGDDDDVE EEEEEDKYRDDHCRTGDEELRGYSRSEVTVIDTSYEVWKSDKLVFRRKNDWKVRDKKGRSWLSSAATRKKKKKQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24500			unknown protein		Lus10015567 [exp]	0	1
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10003684 [exp]	11.0	0.7183
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Lus10015536 [exp]	30.8	0.6255
AT5G22120			unknown protein		Lus10004788 [exp]	32.2	0.6304
AT1G55630			Pentatricopeptide repeat (PPR)...		Lus10027465 [exp]	65.9	0.6009
AT5G08415			Radical SAM superfamily protei...		Lus10013451 [exp]	74.0	0.5752
AT5G50180			Protein kinase superfamily pro...		Lus10032086 [exp]	94.4	0.5519
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10039924 [exp]	100.9	0.5830
AT3G44240			Polynucleotidyl transferase, r...		Lus10038113 [exp]	123.4	0.5665
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Lus10001799 [exp]	146.4	0.5717
AT4G31200			SWAP (Suppressor-of-White-APri...		Lus10008260 [exp]	147.3	0.5588

Compare expression of checked genes

Lus10015567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.