Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032936 [exp] 142 / 3e-44 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G021300 [exp] 47 / 2e-06 AT5G24500 81 / 6e-17 unknown protein Potri.015G005100 [exp] 44 / 1e-05 AT5G24500 68 / 2e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015568 pacid=23145892 polypeptide=Lus10015568 locus=Lus10015568.g ID=Lus10015568.BGIv1.0 annot-version=v1.0 ATGGTGGAGGAGCCAGGAAGAAGAAAGCTAAGGTGTTCAGTTCCCACGTTGTTTCTTCGATTGTGGTTACCAATGGCCGGAATTGTGTGTCGCAGTTTGA TGATGTTAAATGGCTCTAGTAGAGTTTCTGAGAAGCTGCTCAGGAAGAAGGATGTTTGGAAGGCGACGGACATGAAAGATAAGTCATGGCTGGCTGTGAC CAAGAAGAAAAAAAAGGGGATTGGCGCACTGAGATCTGAGAATGATCATCATGGTATTGCTAGTGGAGCAAAGACGAAAACTAAAGTCTTCAACTCCCAT GTCGGTTCCTCGACTGTGTTTCCTAATGGCAGAAGCTCTGCATCGCCGTTTGATGATGCTCAGAACGAGAATGAGAGAGTGGAAGACGTTTCCAGAGAAG TGGCAGATGAGCTTATTCGCCAAGTTCCTAAACACAGGCAAGTATAA
AA sequence Show only first row Show all	>Lus10015568 pacid=23145892 polypeptide=Lus10015568 locus=Lus10015568.g ID=Lus10015568.BGIv1.0 annot-version=v1.0 MVEEPGRRKLRCSVPTLFLRLWLPMAGIVCRSLMMLNGSSRVSEKLLRKKDVWKATDMKDKSWLAVTKKKKKGIGALRSENDHHGIASGAKTKTKVFNSH VGSSTVFPNGRSSASPFDDAQNENERVEDVSREVADELIRQVPKHRQV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015568 [exp]	0	1
AT4G00960			Protein kinase superfamily pro...		Lus10015423 [exp]	15.9	0.7730
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	17.3	0.7737
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10003960 [exp]	39.2	0.7496
AT5G64150			RNA methyltransferase family p...		Lus10015342 [exp]	41.9	0.7498
AT1G11340			S-locus lectin protein kinase ...		Lus10015424 [exp]	43.5	0.7434
AT4G16580			Protein phosphatase 2C family ...		Lus10016309 [exp]	45.9	0.7487
AT5G10320			unknown protein		Lus10000634 [exp]	58.0	0.7297
AT2G39910			ARM repeat superfamily protein...		Lus10028256 [exp]	62.7	0.7370
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10028237 [exp]	63.9	0.7015
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Lus10023549 [exp]	73.8	0.7045

Compare expression of checked genes

Lus10015568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.