Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24570 100 / 5e-27 DIC2 dicarboxylate carrier 2 (.1) AT5G09470 91 / 3e-23 DIC3 dicarboxylate carrier 3 (.1) AT2G22500 74 / 2e-17 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT5G19760 49 / 2e-08 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015897 [exp] 99 / 1e-26 AT4G24570 184 / 2e-56 dicarboxylate carrier 2 (.1) Lus10035936 [exp] 92 / 3e-24 AT4G24570 209 / 5e-67 dicarboxylate carrier 2 (.1) Lus10024540 [exp] 87 / 1e-21 AT5G09470 91 / 3e-19 dicarboxylate carrier 3 (.1) Lus10043336 [exp] 72 / 2e-18 AT2G22500 74 / 4e-17 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Lus10025725 [exp] 74 / 2e-17 AT2G22500 310 / 2e-106 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Lus10009271 [exp] 54 / 1e-10 AT4G24570 138 / 7e-41 dicarboxylate carrier 2 (.1) Lus10007883 [exp] 49 / 6e-08 AT5G19760 536 / 0.0 Mitochondrial substrate carrier family protein (.1) Lus10030361 [exp] 48 / 7e-08 AT5G19760 489 / 9e-177 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G157300 [exp] 112 / 1e-31 AT2G22500 412 / 2e-145 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.002G104400 [exp] 111 / 3e-31 AT2G22500 427 / 1e-151 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G047800 [exp] 97 / 9e-26 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1) Potri.017G045332 [exp] 97 / 1e-25 AT2G22500 410 / 1e-144 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045100 [exp] 97 / 1e-25 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045150 [exp] 97 / 1e-25 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045400 [exp] 97 / 1e-25 AT4G24570 355 / 4e-123 dicarboxylate carrier 2 (.1) Potri.007G113000 [exp] 92 / 8e-24 AT4G24570 404 / 4e-142 dicarboxylate carrier 2 (.1) Potri.003G220400 [exp] 49 / 2e-08 AT5G19760 498 / 6e-180 Mitochondrial substrate carrier family protein (.1) Potri.001G004500 [exp] 48 / 9e-08 AT5G19760 519 / 0.0 Mitochondrial substrate carrier family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015570 pacid=23145913 polypeptide=Lus10015570 locus=Lus10015570.g ID=Lus10015570.BGIv1.0 annot-version=v1.0 ATGAACATCCTCAAGTTTGAATGGGTCGCCGCTCTGTTCTCCGATGTCTCCGCCACCGTCCTTCGCCAGACTCTCTACTCCACCACCGGGATGGGTCTCT ACGACGTCCTCAAGACCAAGTGGACCAATCCTCATATTGGGAACATGTCTCTCGTTAGCAAAATCACCGTCGGATTAATCGTCAGCGGGATCGGAGCGGT GGTGGGGAACCCGGTCGACAGCAGAGCGAGGATTGTGCGATTAAGACGATGA
AA sequence Show only first row Show all	>Lus10015570 pacid=23145913 polypeptide=Lus10015570 locus=Lus10015570.g ID=Lus10015570.BGIv1.0 annot-version=v1.0 MNILKFEWVAALFSDVSATVLRQTLYSTTGMGLYDVLKTKWTNPHIGNMSLVSKITVGLIVSGIGAVVGNPVDSRARIVRLRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015570 [exp]	0	1
					Lus10023370 [exp]	1.4	0.9491
AT3G03550			RING/U-box superfamily protein...		Lus10009326 [exp]	2.0	0.9381
AT4G22780		ACR7	ACT domain repeat 7 (.1)		Lus10006662 [exp]	2.2	0.9184
AT2G25270			unknown protein		Lus10038102 [exp]	2.4	0.9344
AT3G16210			F-box family protein (.1)		Lus10023372 [exp]	3.5	0.9180
AT5G17850			Sodium/calcium exchanger famil...		Lus10005673 [exp]	3.5	0.9236
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Lus10019847 [exp]	10.7	0.8682
AT4G16490			ARM repeat superfamily protein...		Lus10039047 [exp]	11.0	0.8768
AT3G57120			Protein kinase superfamily pro...		Lus10029720 [exp]	11.8	0.8856
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10000275 [exp]	12.0	0.8696

Compare expression of checked genes

Lus10015570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.