Plant FIBer expression Database

Lus10015572 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G24460 259 / 5e-87 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032931
[exp]
203 / 1e-67 AT5G24460 133 / 1e-39 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G002500
[exp]
294 / 7e-101 AT5G24460 246 / 5e-81 unknown protein
Potri.010G149800
[exp]
77 / 1e-18 AT5G24460 80 / 3e-19 unknown protein
PFAM info
Representative CDS sequence
>Lus10015572 pacid=23145921 polypeptide=Lus10015572 locus=Lus10015572.g ID=Lus10015572.BGIv1.0 annot-version=v1.0
ATGTCCGTCCCCAATCCAATCGGCAACAACCGCCGCAGTAGCCGTTTCCCGACCCCTAACTGTCTCTCCGAGTGGCTTAAACCCCGATTACCTTCCGATT
CGTTCGCCTCCTGGGGAGTCAAGCCGGGAACCAAAAACGTCCACAACCTCTGGCTCGAGATCTCCGAAGGCGAAACCTCCCTCGCCGATTCCACCCCTCC
GATTCGCAATCTCAACGTCGTCACCGTGCGCGTCATCGGCAAGGAGAATCTCGTCCTGGTGGAATCTCATCAGGAGCTCTCCGATGGAACCGTGAGGAGT
CGGTACCGGCCTTTATCGGAAAAGATGAAGCCCGACGAGAGCCCTGAATCCGCCGTGTTGCGTGCTGTTAGAGAAGAGCTCGGATCGATCGGAGGGGAAG
TGAGGATTTTGCCTGATTCGTACAGGGAGAAAGTAGAGGAGAGAGTTTCGGCGTCGTACCCTGGTTTGCCGGCTCGTTATGTTTTGTATTCGGTGGATGC
GATGGTGGATGGATTGCCTGAAGGTGATTTTGCGACGGAAGAAGGAGATGAGTATTTGGATTCGGAGGAGAATAAGGTTGCTGACAAAGCTGTGAAAGTT
AGGAAGCATTTCTGGAAGTGGGTTAGTCTTGATACTGTTCAATTCTGA
AA sequence
>Lus10015572 pacid=23145921 polypeptide=Lus10015572 locus=Lus10015572.g ID=Lus10015572.BGIv1.0 annot-version=v1.0
MSVPNPIGNNRRSSRFPTPNCLSEWLKPRLPSDSFASWGVKPGTKNVHNLWLEISEGETSLADSTPPIRNLNVVTVRVIGKENLVLVESHQELSDGTVRS
RYRPLSEKMKPDESPESAVLRAVREELGSIGGEVRILPDSYREKVEERVSASYPGLPARYVLYSVDAMVDGLPEGDFATEEGDEYLDSEENKVADKAVKV
RKHFWKWVSLDTVQF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G24460 unknown protein Lus10015572
[exp]
0 1
AT4G25130 PMSR4 peptide met sulfoxide reductas... Lus10032504
[exp]
2.2 0.9286
AT1G64700 unknown protein Lus10017341
[exp]
2.4 0.9092
AT5G57360 LKP1, FKL2, ADO... ZEITLUPE, LOV KELCH PROTEIN 1,... Lus10006959
[exp]
3.5 0.8899
AT3G18490 Eukaryotic aspartyl protease f... Lus10032481
[exp]
3.7 0.9259
AT4G38220 AQI aquaporin interactor, Peptidas... Lus10026565
[exp]
4.0 0.8945
AT5G51720 2 iron, 2 sulfur cluster bindi... Lus10031686
[exp]
5.7 0.9082
AT1G03495 HXXXD-type acyl-transferase fa... Lus10031587
[exp]
6.7 0.8856
AT5G57360 LKP1, FKL2, ADO... ZEITLUPE, LOV KELCH PROTEIN 1,... Lus10025470
[exp]
8.7 0.9068
AT1G07090 LSH6 LIGHT SENSITIVE HYPOCOTYLS 6, ... Lus10023383
[exp]
9.9 0.8901
AT3G55760 unknown protein Lus10021897
[exp]
10.0 0.8902

Lus10015572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.