Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24530 469 / 3e-167 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 332 / 6e-113 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 327 / 4e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G36690 235 / 5e-75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G44800 216 / 1e-67 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 202 / 4e-62 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 202 / 5e-62 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G38240 201 / 5e-62 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G60290 200 / 1e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G16330 195 / 1e-59 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032930 [exp] 594 / 0 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 333 / 1e-113 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10024882 [exp] 242 / 7e-78 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000711 [exp] 236 / 1e-75 AT5G24530 263 / 4e-86 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035782 [exp] 230 / 3e-73 AT5G24530 258 / 4e-84 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10014398 [exp] 215 / 8e-67 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023890 [exp] 213 / 4e-66 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037292 [exp] 210 / 7e-65 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004808 [exp] 203 / 1e-62 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002800 [exp] 496 / 8e-178 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 495 / 1e-177 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 358 / 2e-123 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 357 / 6e-123 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 348 / 1e-119 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 323 / 1e-109 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451600 [exp] 273 / 4e-90 AT4G10500 406 / 5e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150200 [exp] 256 / 4e-83 AT4G10500 323 / 1e-109 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451500 [exp] 252 / 8e-82 AT4G10500 325 / 2e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G039500 [exp] 237 / 6e-76 AT4G10500 244 / 1e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10015573 pacid=23145925 polypeptide=Lus10015573 locus=Lus10015573.g ID=Lus10015573.BGIv1.0 annot-version=v1.0 ATGGATACTAAAGTCTTGTCCACGGGAGTCCCTTTCACCAACCTGCCGGAAAGTTACGTCAGGCCGGAATCCGACCGCCCCCGCCTCTCCCAAGTCCTCC AATCCACTGACATTCCGGTCATCGACCTTTCCGTACCAGACAGGTCACTAATTGTCCGCCAAATCGAAGATGCATGCACCAAATATGGTATCTTCCAGGT GATCAACCATGGAGTGGAATTGGGGGCGAAGGAGGATATGCTAAGAGTGGGGAAGGGGTTCTTCGAGCTGCCGGTGGAGGAGAAGATGAAGATTTACTCA GACGACCCATCAAAGACGACGAGGTTGTCGACGAGCTTCAACGTGAAGAAGGAGAAAGTGCATAATTGGAGAGATTACTTGAGGTTTCACTGTCATCCTC TCCACAAGTACGCCCCTGAATGGCCTTCCAATCCGCCATCTTTCCGGGAGACAGTTAGCAAGTACTGCCAAGAAGTAAGAGAACTAGGGTTCCGTTTGGA AGGGCTGATATCGGAGAGTTTAGGACTGGAAAAGGAGTACATAAGCAAAGTAATGGGTGAACAGGGTCAACACATGGCCGTCAACTTCTACCCGCCATGT CCCGAACCAGAACTAACCTACGGATTGCCGAGCCACACCGACCCTAACGCTCTTACCATCCTCCTTCAAGACCAGCTCGTCGCCGGCCTCCAAGTCCTTA AGGACGGTTCGTGGATCGCCGTCAATCCCCACCCGGATGCCTTCGTCATAAACATCGGCGACCAACTTCAGGCTTTGACCAACGGGAAGTACAAGAGCGT GTGGCATAGAGCGATAACGAATACCGAGAGAGCGAGGATGTCGGTAGCTTCGTTCCTGTGTCCTCAAGACGATGCAGTGATCAGCCCAGCTGTGGGTGGA TCCGTGGGAGGAGCCGTTTACAGAGACTTCACATATGGGGAGTACTACAGTAAGTTTTGGAGCAGGAATTTGGACCAGGAACATTGCTTGGAACTCTTCA AGATCCGTTAG
AA sequence Show only first row Show all	>Lus10015573 pacid=23145925 polypeptide=Lus10015573 locus=Lus10015573.g ID=Lus10015573.BGIv1.0 annot-version=v1.0 MDTKVLSTGVPFTNLPESYVRPESDRPRLSQVLQSTDIPVIDLSVPDRSLIVRQIEDACTKYGIFQVINHGVELGAKEDMLRVGKGFFELPVEEKMKIYS DDPSKTTRLSTSFNVKKEKVHNWRDYLRFHCHPLHKYAPEWPSNPPSFRETVSKYCQEVRELGFRLEGLISESLGLEKEYISKVMGEQGQHMAVNFYPPC PEPELTYGLPSHTDPNALTILLQDQLVAGLQVLKDGSWIAVNPHPDAFVINIGDQLQALTNGKYKSVWHRAITNTERARMSVASFLCPQDDAVISPAVGG SVGGAVYRDFTYGEYYSKFWSRNLDQEHCLELFKIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10015573 [exp]	0	1
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10008600 [exp]	1.0	0.8676
AT4G27290			S-locus lectin protein kinase ...		Lus10039733 [exp]	3.0	0.7367
					Lus10041761 [exp]	4.5	0.7335
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Lus10026246 [exp]	5.5	0.7742
AT2G39210			Major facilitator superfamily ...		Lus10037948 [exp]	5.7	0.7368
AT3G62040			Haloacid dehalogenase-like hyd...		Lus10009256 [exp]	5.7	0.7595
AT1G02810			Plant invertase/pectin methyle...		Lus10013416 [exp]	7.9	0.7414
AT3G47110			Leucine-rich repeat protein ki...		Lus10030854 [exp]	12.3	0.6558
AT5G10530			Concanavalin A-like lectin pro...		Lus10014648 [exp]	29.7	0.7073
					Lus10039654 [exp]	30.0	0.7071

Compare expression of checked genes

Lus10015573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.