Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015575 pacid=23145920 polypeptide=Lus10015575 locus=Lus10015575.g ID=Lus10015575.BGIv1.0 annot-version=v1.0 ATGAGAGAAATTTACAAGCTATTTGGCCATAACGATAGCAGTGATCCTCGCGGTGTTATGGGAGTTACACGTGTTGGATGTGCCATAATCTCTGCGTTAA TCTGGATACTTGTCTTTAGAATCCCATATGAAGAGATAGCGCTATACGTCCTAATATTCCTCCAACAAAAGGATTCAGAGTACGCTTGCAATATACTCTA CATACTCCTTAGAGCTGCAGCACTTGGTTTGACCTATGCGGTTTACAAATTCGGCCAAGGAGTTGAAGCAGGCACCTACAGACTTGGACACCTCGGGAGA CTCGTGGACTACGCGGCCTTTGCACTGATTACAGCGATTCTGGCGTCGAGCATGGGAGGGGGCCGTGATAGGTATCAGCTTAGAGTTCCATTGTCTGATG AAGTTGGGATGGAACTTGCTGGACTACACTTTTATGGATATGATGATGATTGA
AA sequence Show only first row Show all	>Lus10015575 pacid=23145920 polypeptide=Lus10015575 locus=Lus10015575.g ID=Lus10015575.BGIv1.0 annot-version=v1.0 MREIYKLFGHNDSSDPRGVMGVTRVGCAIISALIWILVFRIPYEEIALYVLIFLQQKDSEYACNILYILLRAAALGLTYAVYKFGQGVEAGTYRLGHLGR LVDYAAFALITAILASSMGGGRDRYQLRVPLSDEVGMELAGLHFYGYDDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015575 [exp]	0	1
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10022378 [exp]	6.4	0.7211
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10034440 [exp]	9.2	0.6721
AT5G16420			Pentatricopeptide repeat (PPR-...		Lus10005989 [exp]	19.9	0.6492
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10024161 [exp]	20.4	0.6989
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10038396 [exp]	27.0	0.6783
AT1G43170		RPL3A, ARP1, EM...	embryo defective 2207, ribosom...		Lus10006181 [exp]	30.9	0.6757
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028836 [exp]	31.9	0.6422
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003324 [exp]	36.0	0.6673
AT1G04480			Ribosomal protein L14p/L23e fa...		Lus10024943 [exp]	36.6	0.6628
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10010183 [exp]	46.8	0.6424

Compare expression of checked genes

Lus10015575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.