Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54160 596 / 0 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 336 / 6e-114 O-methyltransferase family protein (.1) AT1G51990 331 / 3e-112 O-methyltransferase family protein (.1.2) AT1G33030 320 / 6e-108 O-methyltransferase family protein (.1) AT1G21130 317 / 1e-106 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G77530 312 / 3e-104 O-methyltransferase family protein (.1) AT1G21100 311 / 5e-104 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1) AT1G63140 310 / 1e-103 O-methyltransferase family protein (.1.2) AT1G21110 309 / 2e-103 IGMT3 indole glucosinolate O-methyltransferase 3, O-methyltransferase family protein (.1) AT1G21120 309 / 3e-103 IGMT2 indole glucosinolate O-methyltransferase 2, O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032929 [exp] 739 / 0 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10005133 [exp] 376 / 1e-129 AT5G54160 381 / 1e-131 O-methyltransferase 1 (.1) Lus10002667 [exp] 367 / 4e-126 AT5G54160 368 / 1e-126 O-methyltransferase 1 (.1) Lus10002669 [exp] 357 / 4e-122 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10006146 [exp] 335 / 2e-113 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1) Lus10009442 [exp] 301 / 3e-100 AT1G33030 320 / 9e-108 O-methyltransferase family protein (.1) Lus10014400 [exp] 244 / 5e-78 AT3G53140 562 / 0.0 O-methyltransferase family protein (.1) Lus10023892 [exp] 239 / 3e-76 AT3G53140 560 / 0.0 O-methyltransferase family protein (.1) Lus10014825 [exp] 238 / 7e-76 AT1G33030 270 / 8e-89 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G006400 [exp] 636 / 0 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.015G003100 [exp] 613 / 0 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1) Potri.014G106600 [exp] 411 / 3e-143 AT5G54160 416 / 3e-145 O-methyltransferase 1 (.1) Potri.002G180600 [exp] 393 / 2e-136 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.002G180433 [exp] 392 / 4e-136 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.002G180500 [exp] 391 / 7e-136 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 391 / 7e-136 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.001G451100 [exp] 387 / 8e-134 AT5G54160 384 / 7e-133 O-methyltransferase 1 (.1) Potri.002G180700 [exp] 378 / 8e-131 AT5G54160 393 / 8e-137 O-methyltransferase 1 (.1) Potri.011G150500 [exp] 363 / 6e-125 AT5G54160 364 / 2e-125 O-methyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10015576 pacid=23145906 polypeptide=Lus10015576 locus=Lus10015576.g ID=Lus10015576.BGIv1.0 annot-version=v1.0 ATGGGCTCAACACCAGAAACCCAGATGACCCCAACCCAGATCTCCGACGAGGAAGCGCATCTCTTCGCTATGCAGCTAGCCAGCGCATCGGTCCTACCAA TGGTCCTCAAATCAGCACTCGAGCTCGACCTTCTCGAGATCATTTCCAAATCTGCCGGGTCTGGAACTTACCTTTCCCCTTCCGAAATCGCCTCTCACCT ACCCACTAAAAACCCAGAAGCTCCCGTCGTTCTTGACCGCATCTGCCGCCTCTTGGCTTCTTACTCTGTTCTCACTTGCTCCCTCCGTCCTTTATCGGAC GGCACCGTCGAGCGCCTCTATGGGCCCGCCCCTGTCTGCAAGTTCCTCACCAAGAACGAGGACGGCGTCTCCATCGCCGCCCTTGCTCTCATGAACCAGG ACAAGGTCCTCATGGAGAGCTGGTATCACTTGAAAGATGCGGTGTTGGACGGAGGGATCCCGTTCAACAAGGCGTACGGGATGACAGCGTTCGAGTACCA CGGTACCGACCCACGTTTCAACAAGGTGTTCAACAAAGGGATGTCTGATCATTCCACCATCACAATGAAGAAGATCTTGGAGACTTACACAGGATTCGAC GTCCTGAAGTCGCTGGTGGATGTTGGTGGTGGCACTGGAGCTGTTCTGAGCATGATCCTATCCAAGCACCCTTCCATTAAAGGGATTAACTTCGATTTGC CTCATGTCATTGAAGACGCCCCTGCTCTTCCTGGCGTCCAGCACGTTGGTGGTGACATGTTTGCCAGCGTCCCCACTGGAGATGCCATTTTCATGAAGTG GATATGCCATGACTGGAGTGACCAGCACTGCCTGAAGTTCCTGAAGAACTGCTTCGACGCACTGCCAGCAAACGGGAAGGTGATAGTGTGCGAGTGCATA ATGCCAGTGGCTCCGGACACGGGCCTGGCGACGAGGAACGTGGTGCACATAGACTGCATCATGTTGGCTCACAACCCAGGTGGCAAAGAGAGGACCCAGG CGGAGTTTGAGTCCTTGGCTAAGGGCGCTGGGTTCCAGGGCTTCCGAGTCGTGTGCTCTGCTTTCAACACCTATGTCATGGAGTTCCTCAAGACCGCCGC CTAA
AA sequence Show only first row Show all	>Lus10015576 pacid=23145906 polypeptide=Lus10015576 locus=Lus10015576.g ID=Lus10015576.BGIv1.0 annot-version=v1.0 MGSTPETQMTPTQISDEEAHLFAMQLASASVLPMVLKSALELDLLEIISKSAGSGTYLSPSEIASHLPTKNPEAPVVLDRICRLLASYSVLTCSLRPLSD GTVERLYGPAPVCKFLTKNEDGVSIAALALMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFD VLKSLVDVGGGTGAVLSMILSKHPSIKGINFDLPHVIEDAPALPGVQHVGGDMFASVPTGDAIFMKWICHDWSDQHCLKFLKNCFDALPANGKVIVCECI MPVAPDTGLATRNVVHIDCIMLAHNPGGKERTQAEFESLAKGAGFQGFRVVCSAFNTYVMEFLKTAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10015576 [exp]	0	1
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10020549 [exp]	1.7	0.9846
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032593 [exp]	2.0	0.9864
AT2G03200			Eukaryotic aspartyl protease f...		Lus10025702 [exp]	3.2	0.9854
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10032929 [exp]	3.2	0.9808
AT2G03200			Eukaryotic aspartyl protease f...		Lus10035961 [exp]	3.5	0.9807
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10006258 [exp]	4.5	0.9844
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029638 [exp]	6.3	0.9754
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031142 [exp]	7.3	0.9773
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019885 [exp]	7.5	0.9783
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10027782 [exp]	9.5	0.9805

Compare expression of checked genes

Lus10015576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.