Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042586 [exp] 64 / 1e-13 ND / Lus10011725 [exp] 55 / 5e-10 ND / Lus10024524 [exp] 44 / 5e-06 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015577 pacid=23145893 polypeptide=Lus10015577 locus=Lus10015577.g ID=Lus10015577.BGIv1.0 annot-version=v1.0 ATGGTAGCCAAACCTCATGGTCATGAGGTCAAAACTCCAGATTTATCGAAGGCGACGACCTCTAAACAACAGGCTAAGTATCTCAAGCTTTTACCTTTGA TTTTTCATACCTATATTACTATGGATGACACATCAATAGCTGTCTCTAAAGTCGACGAGGGTGCTTCCTCCATATCTAATCATCAGTCGATGGTTGAGGA TGTTGTAACTCCACCTTGTGTGGATTTACTATCATCTGATTCTCAACCTGGCTCTTTCCCTTTTCCAGGTTTACCGAACATGTCTCTCACTAACTGGAAA CGTCCTCGTGAGGTGAATACAAAAGGTGATGATGGTGGAGTAGACTCTTCCTCTACCTAG
AA sequence Show only first row Show all	>Lus10015577 pacid=23145893 polypeptide=Lus10015577 locus=Lus10015577.g ID=Lus10015577.BGIv1.0 annot-version=v1.0 MVAKPHGHEVKTPDLSKATTSKQQAKYLKLLPLIFHTYITMDDTSIAVSKVDEGASSISNHQSMVEDVVTPPCVDLLSSDSQPGSFPFPGLPNMSLTNWK RPREVNTKGDDGGVDSSST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015577 [exp]	0	1
					Lus10022574 [exp]	1.4	0.8198
AT3G26270		CYP71B25	"cytochrome P450, family 71, s...		Lus10028112 [exp]	15.8	0.7199
AT2G23140			RING/U-box superfamily protein...		Lus10019306 [exp]	22.2	0.6331
AT4G36210			Protein of unknown function (D...		Lus10010626 [exp]	23.0	0.6719
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10042079 [exp]	24.3	0.6678
					Lus10000768 [exp]	25.1	0.6983
AT4G20050		QRT3	QUARTET 3, Pectin lyase-like s...		Lus10036231 [exp]	25.3	0.6663
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Lus10027223 [exp]	27.5	0.7110
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10033519 [exp]	28.1	0.6972
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030086 [exp]	30.0	0.6464

Compare expression of checked genes

Lus10015577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.