Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27660 108 / 2e-30 unknown protein AT5G54148 82 / 5e-21 unknown protein AT5G54150 83 / 9e-21 unknown protein AT2G20310 84 / 2e-19 RIN13 RPM1 interacting protein 13 (.1) AT4G28690 80 / 4e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032928 [exp] 250 / 3e-86 AT4G27660 122 / 4e-35 unknown protein Lus10000498 [exp] 88 / 6e-21 AT2G20310 124 / 1e-30 RPM1 interacting protein 13 (.1) Lus10025944 [exp] 87 / 2e-20 AT2G20310 143 / 1e-37 RPM1 interacting protein 13 (.1) Lus10014249 [exp] 86 / 4e-20 AT2G20310 141 / 7e-37 RPM1 interacting protein 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003200 [exp] 134 / 2e-40 AT4G27660 117 / 3e-33 unknown protein Potri.012G006501 [exp] 122 / 6e-36 AT4G27660 122 / 2e-35 unknown protein Potri.002G255400 [exp] 79 / 1e-17 AT4G28690 138 / 2e-35 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015578 pacid=23145903 polypeptide=Lus10015578 locus=Lus10015578.g ID=Lus10015578.BGIv1.0 annot-version=v1.0 ATGATCATACCAGACTCAGATAGCGACGGTACTCCGTTAAGACCCATTTTCTGCCTCAAGCTACAGAACAGAATGGACATCGGGAAGTACGACGAGATCG ATGACTGCTTCATCGTCGATTTCGACCCTGACGGCTCCGGCGGCCTCCCCGTCAATCCGAATCTCGAGAACCCCAACCCGGAATCCGACGACATAATCCT GGTTGCTTGCAGAGACTTCCCGCATTCCAGGTATCAATGTGCCACTTACCCGTTCGACAAAACTCCTCACCAGAAATATTGCCCAAGGTGTTACTACTAT GTGTGTGATGTGGCTGCTCCCTGCAAGTTTTGGGAAGTGGGTGCATCTCCGCATTGTCATGCCGTGGGGCATGTCCAGAGTTGGAAAGTTGAAAGAGCCA AGATGCGAGGAGTTCAGGTAGCTGCTGGTCTTGTTTTGCAACCTCATGGTTAG
AA sequence Show only first row Show all	>Lus10015578 pacid=23145903 polypeptide=Lus10015578 locus=Lus10015578.g ID=Lus10015578.BGIv1.0 annot-version=v1.0 MIIPDSDSDGTPLRPIFCLKLQNRMDIGKYDEIDDCFIVDFDPDGSGGLPVNPNLENPNPESDDIILVACRDFPHSRYQCATYPFDKTPHQKYCPRCYYY VCDVAAPCKFWEVGASPHCHAVGHVQSWKVERAKMRGVQVAAGLVLQPHG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27660			unknown protein		Lus10015578 [exp]	0	1
AT1G04880	ARID		HMG (high mobility group) box ...		Lus10016671 [exp]	13.0	0.7852
AT1G16860			Ubiquitin-specific protease fa...		Lus10005996 [exp]	16.8	0.6876
AT5G18420			unknown protein		Lus10027578 [exp]	94.8	0.6856
AT1G13120		EMB1745	embryo defective 1745 (.1)		Lus10001317 [exp]	105.0	0.7054
AT3G45400			exostosin family protein (.1)		Lus10005684 [exp]	191.1	0.7172
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031223 [exp]	194.3	0.6836
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031799 [exp]	200.0	0.7088
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10024646 [exp]	234.4	0.6947
AT2G14520			CBS domain-containing protein ...		Lus10005259 [exp]	238.5	0.6990
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10027282 [exp]	253.6	0.7045

Compare expression of checked genes

Lus10015578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.