Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49470 174 / 1e-54 NACA2 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) AT4G10480 167 / 7e-52 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1), Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.2) AT1G33040 156 / 6e-48 NACA5 nascent polypeptide-associated complex subunit alpha-like protein 5 (.1) AT3G12390 151 / 4e-46 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) AT5G13850 147 / 2e-44 NACA3 nascent polypeptide-associated complex subunit alpha-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032927 [exp] 259 / 3e-88 AT3G49470 260 / 2e-88 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Lus10041610 [exp] 150 / 2e-45 AT3G12390 229 / 7e-77 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10026133 [exp] 147 / 4e-45 AT3G12390 204 / 2e-68 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10024109 [exp] 146 / 7e-45 AT3G12390 198 / 1e-65 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Lus10008687 [exp] 129 / 4e-35 AT3G15660 197 / 7e-62 A. THALIANA GLUTAREDOXIN 4, glutaredoxin 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003300 [exp] 188 / 5e-60 AT3G49470 172 / 4e-54 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Potri.012G006700 [exp] 187 / 1e-59 AT3G49470 171 / 1e-53 nascent polypeptide-associated complex subunit alpha-like protein 2 (.1) Potri.001G034400 [exp] 147 / 2e-44 AT3G12390 204 / 5e-67 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.003G190800 [exp] 146 / 7e-44 AT3G12390 204 / 7e-67 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1) Potri.006G032000 [exp] 144 / 5e-43 AT3G12390 215 / 2e-71 Nascent polypeptide-associated complex (NAC), alpha subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01849 [flax] [poplar] NAC NAC domain
Representative CDS sequence Show only first row Show all	>Lus10015579 pacid=23145898 polypeptide=Lus10015579 locus=Lus10015579.g ID=Lus10015579.BGIv1.0 annot-version=v1.0 ATGTCGCCCCCAGGTCCAGTCGTTGATCCCATCGAGCCTGAGACCGAGCAGGTCTCCGTCACCGAGGAGAAGCTCCACCAAAAGCCAATCCAGGGTGATG AGCCTGTCGTCGAGGACGTGAAGGAAGAAGACGAGGACGATGATGAAGACGATGATGATGAGGATGATGATGATAAGGACGACGGTACCCCTGGTGCTAA TGGGAGTTCAAAGCAAAGCAGAAGCGAGAAGAAGAGCCGTAAGGCAATGCTGAAGCTCGGCATGAAACCTGTTACTGGTGTTAGCAGGGTCACCATTAAG AGAACCAAGAACATACTATTCTTCATCTCCAAACCAGACGTTTTCAAGAGCCCCAACTCTGACACCTACATCATATTTGGTGAGGCTAAGATCGAGGACT TGAGCTCCCAGCTTCAGACACAGGCTGCCCAGCAGTTCAGAATGCCCGATATGGCATCTGTGCTACCGAAATCCGACCCGGCTGCAGCAGCTGCTGCAGC ACAGGCAGATGAGGAAGAGGAGGAAATTGACGAAACTGGAATCGAGGCTCGGGATATCGATTTGGTTATGACACAGGCAGGAGTTTCGAGGGCTAAGGCT TGCAAGGCTCTCAAGACTCACAGCGGTGACATTGTCAGTGCTATCATGGAGCTCACCACTTGA
AA sequence Show only first row Show all	>Lus10015579 pacid=23145898 polypeptide=Lus10015579 locus=Lus10015579.g ID=Lus10015579.BGIv1.0 annot-version=v1.0 MSPPGPVVDPIEPETEQVSVTEEKLHQKPIQGDEPVVEDVKEEDEDDDEDDDDEDDDDKDDGTPGANGSSKQSRSEKKSRKAMLKLGMKPVTGVSRVTIK RTKNILFFISKPDVFKSPNSDTYIIFGEAKIEDLSSQLQTQAAQQFRMPDMASVLPKSDPAAAAAAAQADEEEEEIDETGIEARDIDLVMTQAGVSRAKA CKALKTHSGDIVSAIMELTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49470		NACA2	nascent polypeptide-associated...		Lus10015579 [exp]	0	1
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10030325 [exp]	1.0	0.9631
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10040332 [exp]	4.0	0.9531
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10015123 [exp]	6.7	0.9453
AT4G39200			Ribosomal protein S25 family p...		Lus10021706 [exp]	7.2	0.9396
AT2G25970			KH domain-containing protein (...		Lus10023854 [exp]	8.1	0.9192
AT1G65700			Small nuclear ribonucleoprotei...		Lus10042884 [exp]	8.5	0.9058
AT4G37210			Tetratricopeptide repeat (TPR)...		Lus10019658 [exp]	10.7	0.9063
AT1G09690			Translation protein SH3-like f...		Lus10029302 [exp]	12.0	0.9342
AT5G18380			Ribosomal protein S5 domain 2-...		Lus10034378 [exp]	13.5	0.9152
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10033607 [exp]	17.7	0.9378

Compare expression of checked genes

Lus10015579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.