Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05260 209 / 2e-66 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT4G11290 201 / 3e-63 Peroxidase superfamily protein (.1) AT3G21770 201 / 3e-63 Peroxidase superfamily protein (.1) AT5G06730 199 / 5e-62 Peroxidase superfamily protein (.1) AT5G51890 197 / 7e-62 Peroxidase superfamily protein (.1) AT4G36430 197 / 2e-61 Peroxidase superfamily protein (.1) AT2G38390 195 / 1e-60 Peroxidase superfamily protein (.1) AT4G37530 194 / 2e-60 Peroxidase superfamily protein (.1.2) AT5G64120 193 / 4e-60 Peroxidase superfamily protein (.1) AT5G15180 191 / 4e-59 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032926 [exp] 416 / 9e-148 AT1G05260 292 / 5e-98 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10028736 [exp] 229 / 3e-74 AT1G05260 266 / 4e-88 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039680 [exp] 221 / 5e-71 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10028688 [exp] 220 / 3e-70 AT4G11290 265 / 5e-87 Peroxidase superfamily protein (.1) Lus10027164 [exp] 219 / 4e-70 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10015127 [exp] 214 / 4e-68 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10031548 [exp] 211 / 4e-67 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10038054 [exp] 205 / 2e-64 AT5G51890 264 / 7e-87 Peroxidase superfamily protein (.1) Lus10018374 [exp] 199 / 2e-62 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003600 [exp] 338 / 5e-117 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003500 [exp] 318 / 7e-109 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 292 / 6e-99 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 228 / 1e-73 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 228 / 1e-73 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 228 / 1e-73 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 228 / 1e-73 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 228 / 2e-73 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 227 / 2e-73 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.005G108900 [exp] 212 / 1e-67 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10015580 pacid=23145888 polypeptide=Lus10015580 locus=Lus10015580.g ID=Lus10015580.BGIv1.0 annot-version=v1.0 ATGCACTTCCACGACTGCTTCGTCCGAGGGTGCGATGTATCAGTATTGATAGATTCGACCACATCCAACACGGCTGAGAAAGACAACCCGGCCAACAACC CCAGCCTTCGAGGTTTCCAAGTGATCGATACCGCCAAGTCTAGGCTCAAAGGCATCTGCAAAGGGGTTGTTTCTTGTGCTGACATTCTGGCCTTCGCTGC AAGGGATCGCATCGAGTTGAGTGGAGGAGTTGGCTACGACATCCCTTTGGGAAGAAGAGACGGCAGAATTTCATCGTTGTCTGAAGCCTCATCAAACTTA CCTCGTCCATCAGCCAACGTAGCTCAACTCCTCAAATCTTCGCCAACAAGGGACTTTCTCAGGCCAAAATGGTCTCTCTCTCCGCTCTTCAAATTCGTGG TTGCAGGACATACCATAGGCCGTTCGCACTGCACATCCGTGTCGCCTAGGCTGTACAACTTCAACGGAACGGGTCAGGATCCGACTCTGGACTCCAACTA TGCCACAGCCTTGAAGCAGCAGTGTCCACAGGGGAACTCCAATGCTAACCTTGTGGTGCCGATGAATCCTAGCAGCCCCGCCGTATTGGATGAGAGCTAC TACGTGGACATCCTCTCCAACCGCGGCCTCTTCACCTCTGACCAGATCCTGCTCACAAACGCTGCAACCGCAGCCCAGGTTAGCCAGAATGCAGCAAGCC GGGCTCGCTGGAGTGCCAAGTTTTCCGCTGACATGGTTAAGATGGGTCAGATCGGCGTTTCGACTGGCACCGCTGGTGAGATTCGAGCCAACCGCAGGGT AATCAACAGCTAG
AA sequence Show only first row Show all	>Lus10015580 pacid=23145888 polypeptide=Lus10015580 locus=Lus10015580.g ID=Lus10015580.BGIv1.0 annot-version=v1.0 MHFHDCFVRGCDVSVLIDSTTSNTAEKDNPANNPSLRGFQVIDTAKSRLKGICKGVVSCADILAFAARDRIELSGGVGYDIPLGRRDGRISSLSEASSNL PRPSANVAQLLKSSPTRDFLRPKWSLSPLFKFVVAGHTIGRSHCTSVSPRLYNFNGTGQDPTLDSNYATALKQQCPQGNSNANLVVPMNPSSPAVLDESY YVDILSNRGLFTSDQILLTNAATAAQVSQNAASRARWSAKFSADMVKMGQIGVSTGTAGEIRANRRVINS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015580 [exp]	0	1
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10017440 [exp]	5.2	0.7744
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Lus10028026 [exp]	36.7	0.7713
AT2G31081		CLE4	CLAVATA3/ESR-RELATED 4 (.1)		Lus10015304 [exp]	51.1	0.7391
AT1G13810			Restriction endonuclease, type...		Lus10010434 [exp]	65.7	0.7028
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10019711 [exp]	65.9	0.7659
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10002435 [exp]	82.2	0.7621
AT3G47570			Leucine-rich repeat protein ki...		Lus10003072 [exp]	145.5	0.7338
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005740 [exp]	173.3	0.7019
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10000992 [exp]	259.3	0.6889

Compare expression of checked genes

Lus10015580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.