Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49490 82 / 1e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032925 [exp] 1337 / 0 AT3G49490 92 / 3e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003700 [exp] 369 / 5e-108 AT3G49490 107 / 2e-23 unknown protein Potri.012G007000 [exp] 335 / 4e-96 AT3G49490 104 / 2e-22 unknown protein Potri.002G230100 [exp] 49 / 6e-07 AT3G49490 45 / 6e-07 unknown protein Potri.003G206701 [exp] 49 / 7e-07 AT3G49490 49 / 4e-08 unknown protein Potri.001G452300 [exp] 49 / 3e-05 AT1G33050 63 / 6e-10 unknown protein Potri.004G080501 [exp] 40 / 0.0006 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015581 pacid=23145891 polypeptide=Lus10015581 locus=Lus10015581.g ID=Lus10015581.BGIv1.0 annot-version=v1.0 ATGATGACGGGGTCTGCTTATTATGGAAATGGAGGATCGTCGTCTTCCTCTTCAAGTTTATCGGCCGCAGCTCCGCCTTTTACCGTCGATCGATCTGTTG CGAAACCCTTCTCCCCACTTATTGACTTCACTGACCAATCTTATCATCATCATCATCCTGTTCCTAAGTTGAATTCTACTCTGCAGCATAGTAATTGGCT TCCATCCAACTCCACTACTCATGACTTTTTCCCCACTTCTGCCACTGAATTTGATCCCATCTCTTCCTCCTCAGTTGACTACACCCACTTGCCTTCAGTT CACGATGACGTTCACTATTCCCTTCTGCCGGATACTCTCCATGAACCCTCCAATCCCTACTACCAGCCTTTTGTTTCTTCCAATTCCCGCAACAAGGCCA GTTCGAACCTTCCTCCTTCCCAATCTGGTTTGTCTAGCACCCATGTGGTGACACCCCCTAGACCTTCTGGTGGTGATAATTTTACTCAAACTGTGTCTCC TTTGGACCACTCGCTTCAATGGAGTGGTATGTGGGATGGGATTTCAGATTGGCAGCAGGGAAATCAGGTGCAACGAGATGGATCTTTTGATTGTAAGGAC AATTATATGAATCAAGGTTTTTATGCACTCAAGAATGTCATTTATGATGAAGAATTCAATTGCATTGATGCCGGAATCCAGGAACATGTGAAGCATGCTG ATTCGGTACAGAAAGATTCCAATTCCTTCCTTGGTGAAAATCCAGAGTTCTTACGTGCTGACTATTCAACAGTGGTGACATGCACATCTGCTCTATCAGT TCCAAAACCATATTCTAAGTTCCCATACTTAGCAGGTGGCAGTTCATTAGGTTATGAAAGTCCTCTCACTGTGTCAATTGATAAGTCCTCAAGGAAACGA AGTCCTAGCTCAATTGATGCTCATTTTACAGCCAAGTTGCCTTCTACCGTCACTATTAGACCACCACATAAAGAAAGGTTCTCTCTCAGAACTATGAGCC CCCAGATTGGCAAAGTAAAAATTTCCAGTCGTGATAGTCCTCCCACTGTTAAAGAGACTGATCAATGTGGAAAGGCTGAAAGCAAACCTTATTTTGATGC TACGCAACTCAGGTTTCACTTGGGAAAAAGTGATGACGAACAAACAAGCAAGGCACGTGGTACAGCAGAAGGCCACTCTGTAGCAAAACCCAGGGTGCCA GTTCCTCAGGTGTATCCAGATGGTTTCAGTGTGGCAGTTGATGATAACAACACCCTGAACTCTGGTGATACTTTTGCTGAAAGCTCGGATCATCACAGTT CTGCTTTGGACTCCCCATGTTGGAAAGGGGCTACAGTCTCTCACTGGTCCACATTGGAAGTGGTCAGGCCATCTAATATCAGAACGGTGGAAGATCTGAG CAGTACAAATTTTTTCGGATCTCAAATTTATCCTTTTAAAACCAATGCCACTGATGGAACCGATCCTCAAAAGATAGAAGTATGTGAGGCGGATGATTAT ACCAGGGGCCCAGAAGGTCGTTCAGCTTCTTTTAAGGGACTCACAGGGACTAACGGGTTTTCAGATGAAGGAATTGGTGGTTCTCTGAAATTTCAGGGTC AAAATGCAGCAGTTAGTTGCAGCACTGGGGTTTCCCTCTTTGGCGATATCCATGGGTCCATCACACAAGACAGCCTGAATGATCAATCAGTGGAGAATTC TGATGGTGAACCTCCTAAGAAACAAATTACTGAGGAAGGTCAAGGTACAGCTGTAAAACATTCAGGGTTTACTGATGGAAGCCTTCATGCTAAGACTGGT GACCTTGAATATCGTGCATCTCATGTGCCATACCATGCTGTAGAGCATGTGCTACTTTCACCCTCTTCAGCAGAACTTAGCTCTTCTGAGTTAATGAGGC CAAGAAATGGCCAATCAGCCCCAGATGTGTATATCCCAACACTGGTTAATTCAATGCGTAACCTCTCAGAGTTGCTTCTCTTTCGCTGTTCAAATGAGGC TTGTGAACTGAGGCAAGAAGATCGTGAGAATCTGAAGGAGGTGGTCAATAATATCCTCTCAAGCGCAATGAACATTTCAAATGGCCTAGTTCCCTTGGAA AAGTTATTGACTCCAGAGAGACAAAATCAACTACATGCACTTAGAAAGGGTTCCAAAATGGCTGTGCCTCAAGTTTCATCTCCAGTGAAAGTCCAACCAC TCAAAGAGGGTCGTAGCACTTTAGATGATATCAAAGATGGGAAGCTACCCAATCTGAGTTCTGAAAGTGCAGCTACCGAGATAGTGAAGCATAAAAGCAC TATGCAGGCTCTGAAGGAGGTTCTTACTGAGAACTTACATGATGAGGATGAATCTCAACCAGAAACACTTTTGTATAAAAATCTGTGGCTTGAGGCTGAA GCACAGCTGTGCTCTGTTAATCATGTGGCTCGTCATAATCGGATGAAGTTTGAGATGGCGAAATGCCATTCCCAGCAGCCTAATGTTGTATCCCAGAATA CAATGTCGATGGGGATGTTTCCAAGACCGGCAGTTTCTTCTGACATTTTCTGTAAGGGAACTTTAAGATTTGATACGAAGTCCCAACAAATCTCGGATGG TCCTGATTCAGATATGTCAGTCTCAAGCGCAAATAGCAATCCAGATGAAACAGTTGCTAGATCCCAGGCGTTTACATCCCCTTCTATCAAGTCTGTAATT GCAAATGCTTCAGCAATTGAGGATGATAAGGAGGCTGGCAAAGCAAATGAAGAATTAAAGGACAGTACAAAGGCCGATGTGTTCATACAGGATACCCACT TGTCGAGTAGAAGTATCCCCATGGAGGATGTGGATGCTTCTGTGATGGCTAGATTCCAAATCCTTAGACACCGAGCTGACAGCTTGAGCTCCAAAACAAT GGACGAAAACCAGCCAGAATGTGCTGATCTTACACACCCATTTGTAAGAAGCCCTCAACCGATTTCTGAATATGTTCCAGAGAAAAAAAGTATGAATGGA AAAGTGGAGACAATCTTGCAGAATAATTCGGTCAAGACCATGGAAGGACAGCTGCTTGTTAAGGAACTTTTCAATCTGCAGAAAGGAAATCAATCCCCTA CAAGGCCAAAGTCCAATGATGCAGGAAATGGGAACACATATACGACCGATATGGAGTCTGGTCTTGTTCCTCCCTTGAGAGGACCTAACCTTTGCAGTAA CAATCATCCTCCTGATGTGAGTGCTCGATTTGCTATGCTGAAGAGCCGGGCGGAGAAACAAGGGTCCCCAAGCTTATGGGATGTGATGGAGAGTTCCAAG ATTTCTCCTGTTTGGAACATGGTTGATATCTTGGAACCTAGAGTCCAGGACACTGCAACCCATATATCTGATGCCGAAGCATTGTATAGGGATCAATTAC AAACCCTGAAACGCATGGTTGACACCAGTGCTCCTGATTCCGAAGCATGGCCGCCTGGAGGCCCGAGAAGGAATTGGCTGGATGGATCCGTCTGTAGAAT GGAAGATGATGATGCCCTGTTTAGTGAGGATAAATCTGATGTGGATGCGTTCCATTCATGTGCCAGATATGACCCTGTGATTCTGCACCATATGGAAAAT AGGCGCAGTGGCGATCATTCTCATGCGAGCTGGTACGAGAGCTCTTCATCTGACTGGGAACATGTACTGAAGGAGGAAGTTGCAGGAAAACCCTGCTGA
AA sequence Show only first row Show all	>Lus10015581 pacid=23145891 polypeptide=Lus10015581 locus=Lus10015581.g ID=Lus10015581.BGIv1.0 annot-version=v1.0 MMTGSAYYGNGGSSSSSSSLSAAAPPFTVDRSVAKPFSPLIDFTDQSYHHHHPVPKLNSTLQHSNWLPSNSTTHDFFPTSATEFDPISSSSVDYTHLPSV HDDVHYSLLPDTLHEPSNPYYQPFVSSNSRNKASSNLPPSQSGLSSTHVVTPPRPSGGDNFTQTVSPLDHSLQWSGMWDGISDWQQGNQVQRDGSFDCKD NYMNQGFYALKNVIYDEEFNCIDAGIQEHVKHADSVQKDSNSFLGENPEFLRADYSTVVTCTSALSVPKPYSKFPYLAGGSSLGYESPLTVSIDKSSRKR SPSSIDAHFTAKLPSTVTIRPPHKERFSLRTMSPQIGKVKISSRDSPPTVKETDQCGKAESKPYFDATQLRFHLGKSDDEQTSKARGTAEGHSVAKPRVP VPQVYPDGFSVAVDDNNTLNSGDTFAESSDHHSSALDSPCWKGATVSHWSTLEVVRPSNIRTVEDLSSTNFFGSQIYPFKTNATDGTDPQKIEVCEADDY TRGPEGRSASFKGLTGTNGFSDEGIGGSLKFQGQNAAVSCSTGVSLFGDIHGSITQDSLNDQSVENSDGEPPKKQITEEGQGTAVKHSGFTDGSLHAKTG DLEYRASHVPYHAVEHVLLSPSSAELSSSELMRPRNGQSAPDVYIPTLVNSMRNLSELLLFRCSNEACELRQEDRENLKEVVNNILSSAMNISNGLVPLE KLLTPERQNQLHALRKGSKMAVPQVSSPVKVQPLKEGRSTLDDIKDGKLPNLSSESAATEIVKHKSTMQALKEVLTENLHDEDESQPETLLYKNLWLEAE AQLCSVNHVARHNRMKFEMAKCHSQQPNVVSQNTMSMGMFPRPAVSSDIFCKGTLRFDTKSQQISDGPDSDMSVSSANSNPDETVARSQAFTSPSIKSVI ANASAIEDDKEAGKANEELKDSTKADVFIQDTHLSSRSIPMEDVDASVMARFQILRHRADSLSSKTMDENQPECADLTHPFVRSPQPISEYVPEKKSMNG KVETILQNNSVKTMEGQLLVKELFNLQKGNQSPTRPKSNDAGNGNTYTTDMESGLVPPLRGPNLCSNNHPPDVSARFAMLKSRAEKQGSPSLWDVMESSK ISPVWNMVDILEPRVQDTATHISDAEALYRDQLQTLKRMVDTSAPDSEAWPPGGPRRNWLDGSVCRMEDDDALFSEDKSDVDAFHSCARYDPVILHHMEN RRSGDHSHASWYESSSSDWEHVLKEEVAGKPC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49490			unknown protein		Lus10015581 [exp]	0	1
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043014 [exp]	1.4	0.8893
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10019899 [exp]	1.4	0.8939
AT3G09850			D111/G-patch domain-containing...		Lus10036327 [exp]	4.5	0.8621
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10034792 [exp]	4.6	0.8801
AT3G51130			unknown protein		Lus10014270 [exp]	6.0	0.8769
AT5G49970		PDX3, ATPPOX	HOMOLOG OF YEAST PYRIDOXINE AU...		Lus10002098 [exp]	8.5	0.8566
AT5G15400			U-box domain-containing protei...		Lus10030697 [exp]	8.7	0.8755
AT5G45190			Cyclin family protein (.1.2)		Lus10041213 [exp]	9.2	0.8725
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	9.9	0.8602
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10002973 [exp]	10.2	0.7719

Compare expression of checked genes

Lus10015581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.