Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24580 243 / 4e-79 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT5G50740 107 / 3e-27 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) AT5G63530 102 / 1e-24 ATFP3 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) AT3G02960 89 / 1e-20 Heavy metal transport/detoxification superfamily protein (.1) AT1G29000 87 / 2e-19 Heavy metal transport/detoxification superfamily protein (.1) AT2G36950 86 / 1e-18 Heavy metal transport/detoxification superfamily protein (.1) AT5G03380 75 / 4e-15 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G60800 70 / 2e-13 Heavy metal transport/detoxification superfamily protein (.1.2) AT2G28090 65 / 4e-12 Heavy metal transport/detoxification superfamily protein (.1) AT4G38580 58 / 4e-10 HIPP26, ATFP6 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032923 [exp] 310 / 5e-105 AT5G24580 313 / 1e-106 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10038785 [exp] 102 / 3e-25 AT5G50740 183 / 6e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10039074 [exp] 101 / 6e-25 AT5G50740 182 / 8e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10012867 [exp] 95 / 3e-21 AT2G40770 1843 / 0.0 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1) Lus10022617 [exp] 89 / 1e-19 AT2G36950 178 / 2e-51 Heavy metal transport/detoxification superfamily protein (.1) Lus10021516 [exp] 88 / 2e-19 AT5G03380 202 / 2e-61 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10014421 [exp] 87 / 5e-19 AT5G03380 193 / 5e-57 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10037044 [exp] 79 / 5e-17 AT3G02960 137 / 6e-40 Heavy metal transport/detoxification superfamily protein (.1) Lus10016133 [exp] 78 / 8e-16 AT5G60800 175 / 3e-52 Heavy metal transport/detoxification superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G007300 [exp] 263 / 6e-87 AT5G24580 251 / 5e-82 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.015G003900 [exp] 254 / 2e-83 AT5G24580 247 / 1e-80 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.016G006600 [exp] 125 / 4e-34 AT5G50740 153 / 5e-45 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.006G006100 [exp] 110 / 2e-28 AT5G50740 143 / 2e-41 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.015G099500 [exp] 104 / 1e-25 AT5G50740 214 / 7e-68 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.012G101400 [exp] 97 / 7e-23 AT5G63530 204 / 2e-63 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) Potri.014G178800 [exp] 89 / 1e-20 AT1G29000 115 / 1e-30 Heavy metal transport/detoxification superfamily protein (.1) Potri.016G017600 [exp] 88 / 1e-20 AT3G02960 199 / 2e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.009G007600 [exp] 87 / 3e-19 AT5G60800 157 / 1e-45 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.016G093100 [exp] 84 / 2e-18 AT2G36950 123 / 5e-32 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10015583 pacid=23145922 polypeptide=Lus10015583 locus=Lus10015583.g ID=Lus10015583.BGIv1.0 annot-version=v1.0 ATGGGAGCGGAAGCTAAACAGGAAGAAGCTAAGCCAGAGGAGGTCAAGCAGCCAGAGGAGGTGAAACAAGAAGCAAAAGAAGAGCCACCGAAAGAAGAGG CGAAAGAAGAGAAGCCAACAGAGGAAAAGAAGGAGGAGGAAGCTAAGCCCCCTCCTCTTTTCATTCTGTTTGTGGACCTGCATTGTGTTGGATGTGCCAA GAAGATTGAGAGATCCCTCTTGAAAATTAGAGGCGTGGAGGGAGTAACAATAGATATGGGTCAGAACCAAGTGACCATCAAAGGAATAGTGGAACCTGAA GCTGTTTGCAACATGATAAGGAAGAAAACTAAGAGAAGAGCTCAAGTGTTATCTCCATTGCCTGAAGCTGAGGGTGAACCCATTCCTCAAGTTGTCAATT CACAGGCTACTGGACCAACAACAGTGGAGCTCAACATAAACATGCACTGCGAGGCCTGCGCTGAGCAGCTCAAGAAAAAGATACTCAAGATGAGAGGAGT GCAAACAGTAGTAACAGAGCTACAAGCAGGGAAAGTCACAGTCATAGGAACCATGGACGCAAACAAGCTGGTGGAATACGTTTACAGGCGCACCAAGAAG CAAGCCAAGATCGTGCCTCAACCGGAGCCAGAGCCCCAACCAGAACCGGAAGAGAAGAAAGAAGAAGAAGCAGCAGGTGAAAATGGGGAGAAGAAAGAAG AGGAGAAGCCAGCAGGAACAGAAGAAGAAGGCAAGAACGAAGAAGGCGGAGGTGAGGCGCCTCCAGCAGCAGATGAAAGTAAGGAGCACGAAGCAATGAA GGAAATGGCGGCCATGGTTGAAGAAGAAAACATGAAGAGGATGATGTACTACCACCAGTACCAGCCGCTGTATGTGATCGAGAGAATCCCACCGCCTCAG CTCTTCAGCGACGAGAACCCAAATGCCTGTTCCGTTTCATAG
AA sequence Show only first row Show all	>Lus10015583 pacid=23145922 polypeptide=Lus10015583 locus=Lus10015583.g ID=Lus10015583.BGIv1.0 annot-version=v1.0 MGAEAKQEEAKPEEVKQPEEVKQEAKEEPPKEEAKEEKPTEEKKEEEAKPPPLFILFVDLHCVGCAKKIERSLLKIRGVEGVTIDMGQNQVTIKGIVEPE AVCNMIRKKTKRRAQVLSPLPEAEGEPIPQVVNSQATGPTTVELNINMHCEACAEQLKKKILKMRGVQTVVTELQAGKVTVIGTMDANKLVEYVYRRTKK QAKIVPQPEPEPQPEPEEKKEEEAAGENGEKKEEEKPAGTEEEGKNEEGGGEAPPAADESKEHEAMKEMAAMVEEENMKRMMYYHQYQPLYVIERIPPPQ LFSDENPNACSVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24580			Heavy metal transport/detoxifi...		Lus10015583 [exp]	0	1
AT5G24580			Heavy metal transport/detoxifi...		Lus10032923 [exp]	1.0	0.9466
AT4G14010		RALFL32	ralf-like 32 (.1)		Lus10023223 [exp]	3.0	0.8324
AT3G07190			B-cell receptor-associated pro...		Lus10038188 [exp]	3.2	0.8483
AT4G16695			unknown protein		Lus10028968 [exp]	5.3	0.8135
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10038310 [exp]	10.7	0.7903
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10018773 [exp]	16.5	0.8127
AT1G71360			Galactose-binding protein (.1)		Lus10002929 [exp]	16.5	0.7925
AT3G60030	SBP	SPL12	squamosa promoter-binding prot...		Lus10004523 [exp]	16.6	0.8178
AT1G79420			Protein of unknown function (D...		Lus10001843 [exp]	18.7	0.8292
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10040745 [exp]	18.7	0.8109

Compare expression of checked genes

Lus10015583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.