Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26540 746 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 320 / 3e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 299 / 4e-90 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 293 / 2e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G25970 285 / 2e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G33680 280 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47840 274 / 5e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 275 / 3e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 273 / 6e-81 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 274 / 7e-81 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032922 [exp] 806 / 0 AT3G26540 509 / 1e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021232 [exp] 314 / 6e-97 AT2G33680 818 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 291 / 6e-88 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 288 / 1e-86 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 290 / 2e-85 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 286 / 3e-85 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 274 / 4e-81 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 272 / 6e-81 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018897 [exp] 280 / 9e-81 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G075300 [exp] 825 / 0 AT3G26540 815 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 310 / 2e-94 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G245300 [exp] 303 / 9e-92 AT3G22690 570 / 0.0 unknown protein Potri.005G215500 [exp] 305 / 2e-91 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 298 / 4e-90 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G018800 [exp] 295 / 1e-88 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 293 / 5e-88 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 293 / 3e-87 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G006800 [exp] 286 / 9e-87 AT2G33680 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G067000 [exp] 288 / 1e-86 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10015584 pacid=23145918 polypeptide=Lus10015584 locus=Lus10015584.g ID=Lus10015584.BGIv1.0 annot-version=v1.0 ATGAGCAAGGCTTCTACGCTATTTGGCTTGCTCGGCAACGCTACCCAGAAGTTCCGATTCCAAGAACCAACCTCATCAAGAGAATTAACCAATCTAATCT CGTCCCATCTCCGATCCAATCGCCTCCAGACGGCCGTCTCCATTCTGTTCGGCTCTCCTTACCCAGTCTCGTTCCCCCTTTACGCCAATCTCTTCAAGCT CTGTGCTTCTCAGCGCGCCATTGTCGAGGCCCGGAAAGTCGAGTTCCATCTAATTACCTTTGAACCTAACCCACCTACCTTTTTACTGAACCGTGCTATT GAGACTTATGGCAAATGTGGTTGCTTACACGATGCCGTCGACCTGTTCGAGGAAATGCCTAAGAGAGACGGTGGCTCTTGGAATGCTGTCATTAATGCAT GCACGCAATGCGGGAGTCCCAACCAAGCATTGAGCTTGTTTAAGGATATGAGGAGACTTGGATGTTCGCCCAATGAGATCACGTTCGCTGGTGTTCTGGG ATCTTGTGGGGATTGCTTGGCACTTCATTTTTCAATGCAAACTCATGGGCTTATAATGAAATGTGGGTTTTGTGGTAACGTGATTTTGGAGACTTCGCTT ATAGATGCTTATGGAAAGTGTAATGCTATGAGGGAAGCGAGGAGGATGTCTGATGAGATTGAGTTTCCTAATGAAGTTACGTGGAATGTCATTCTAAGAC GATATCTTGAGGTTGGGGATTGTAGGGAGGCGATAGTGTCATTGTTGCTTGTTCGGGTATACGTGCAGTTCGGGAGGGGATGCAGATACATGGAATTGCA ACTAGGAGAATGTTTCTGGATAGCGAGGTGGTTTTTGAGTTCTCTCATTGATATGTATGTTAAGTGTGGAAGATTAGAGAGTGCTCGACGGGTTTTCAAT CAGCCTGGCTTGAGAGATTTGATTTCCTGGACTTCTATTGTGTCTGGATATGCAATGAATGGCAAAACGAGAGAGGCAAGAGAACTTTTTGATAATATGC CTGAACGGAATACTTTCTCTTGGAATGGTATGTTGGCTGGATACACTCGCTCCCTTCAGTGGGAAGATGCCTTGGATTTTGTAATTCTGATGCGAAGTAA AATTGATGATTTTGACCATGTCACTATCACATTGTTGCTCAATGTGTGTGCTGGGCTTTCAGATGTTGAAATGGGAAAACAAGTGCATTGCTTTACTTAC CGCCAGGGTCTGCATTCCAATGTTCTTGTTGGAAATGCTCTTTTGGACATGTATGGGAAATGTGGGAACTTGAGAAATGCTAGGATTTGGTTTTTCCAAA TGAGCGAACTACGGGATGGTGTCTCTTGGAATGCTTTGTTGGCTAGCTATGCGAGATATGGCATGGGTGAACAAGCTATGACAATGTTCAGTGAGATGCA ATGGGAAACAAAACCCAGTAAATACACATTTGCAACTCTTCTAGCCGCTTGTGCTAATACTTCTGCTTTCAAAACGGGGAAACAAATTCATGGTTTCATG ATGAGAAACAATTATAAAATTGATGTGGTACTCATGGGAGCTTTGGTCAACATGTACTCTAAATGTAATGGTATTGTATATGCTATGCTGCTCTTTAGGC AAGCAGCTTCACGTGATCTGTTTCTTTGGAACGCCATAATTTTGGGGTTCTCTCGCAGTGGAAAGGGTAAGGAAGCTATTCAGTTGTTTGATTTTATGCG TCGGGAAGAAGTAAGACCAGACCATGTCACGATGCTGGGAATCTTGGAAGCTTGTATACACGAAGGCGATGTTGAGTTGGCTCTCCGCTATTTTCATTCA ATGAGCAATGATTATTTTATTTTACCACGAGTGGAGCACTATGACTGTATAATCGAGCTTTTATGTCAGTATGGAAGCATGATCCAGCTTGAGGACTTTC TTGACAAATTGCCATTTGATCCCACTGTTCCCATGTTGACAAGGGTTGTTAATGCTTGTAGACGGAACAATTTCCAAAGGTTAGGTGAATGGGCAGCTGG CCGACTGAATGAATTCAACAACTCATGA
AA sequence Show only first row Show all	>Lus10015584 pacid=23145918 polypeptide=Lus10015584 locus=Lus10015584.g ID=Lus10015584.BGIv1.0 annot-version=v1.0 MSKASTLFGLLGNATQKFRFQEPTSSRELTNLISSHLRSNRLQTAVSILFGSPYPVSFPLYANLFKLCASQRAIVEARKVEFHLITFEPNPPTFLLNRAI ETYGKCGCLHDAVDLFEEMPKRDGGSWNAVINACTQCGSPNQALSLFKDMRRLGCSPNEITFAGVLGSCGDCLALHFSMQTHGLIMKCGFCGNVILETSL IDAYGKCNAMREARRMSDEIEFPNEVTWNVILRRYLEVGDCREAIVSLLLVRVYVQFGRGCRYMELQLGECFWIARWFLSSLIDMYVKCGRLESARRVFN QPGLRDLISWTSIVSGYAMNGKTREARELFDNMPERNTFSWNGMLAGYTRSLQWEDALDFVILMRSKIDDFDHVTITLLLNVCAGLSDVEMGKQVHCFTY RQGLHSNVLVGNALLDMYGKCGNLRNARIWFFQMSELRDGVSWNALLASYARYGMGEQAMTMFSEMQWETKPSKYTFATLLAACANTSAFKTGKQIHGFM MRNNYKIDVVLMGALVNMYSKCNGIVYAMLLFRQAASRDLFLWNAIILGFSRSGKGKEAIQLFDFMRREEVRPDHVTMLGILEACIHEGDVELALRYFHS MSNDYFILPRVEHYDCIIELLCQYGSMIQLEDFLDKLPFDPTVPMLTRVVNACRRNNFQRLGEWAAGRLNEFNNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10015584 [exp]	0	1
AT1G63130			Tetratricopeptide repeat (TPR)...		Lus10029737 [exp]	1.0	0.9319
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10014113 [exp]	1.7	0.9173
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10014027 [exp]	2.0	0.9179
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10042768 [exp]	3.9	0.9134
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10026558 [exp]	5.2	0.9017
AT5G46100			Pentatricopeptide repeat (PPR)...		Lus10013972 [exp]	5.5	0.8936
AT5G59980			Polymerase/histidinol phosphat...		Lus10028138 [exp]	5.9	0.9118
AT2G31340		EMB1381	embryo defective 1381 (.1)		Lus10035336 [exp]	7.1	0.9011
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10018978 [exp]	7.2	0.8966
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10014212 [exp]	7.9	0.8882

Compare expression of checked genes

Lus10015584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.