Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16040 191 / 3e-60 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032921 [exp] 489 / 4e-176 AT1G16040 206 / 6e-66 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G184701 [exp] 277 / 7e-94 AT1G16040 239 / 4e-80 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06699 [flax] [poplar] PIG-F GPI biosynthesis protein family Pig-F
Representative CDS sequence Show only first row Show all	>Lus10015585 pacid=23145929 polypeptide=Lus10015585 locus=Lus10015585.g ID=Lus10015585.BGIv1.0 annot-version=v1.0 ATGTTGCGATTAGGATTCGCAGAATTCAGTTCTCCAAAACATCGTCTCACTTCCTTCTCCGCCGCTCATCGGTGGTCAATTCTCCGGCCGGTCGTCGCCC GTCACTCCACTCCCGCCACCGCGTTTCTGCACAAGCTCTCCAGCATGAAGGGTAAGAAAAAGAACATAATGCATAAAGAAGCTTCTGCGCCAGTTGAAGT CTCTGAATGCAATGTCTCAATTCTGCAAACATTATTGGTCCATGCAATATGTGGACTTGGTTTAGCTATCGGATTGTGGATATCCCACCGTTGGTACTCC ATCAATCTTGTTTCTCATTCATCAGACACCATCTTCTTGATTTGGATTGTCGAGACTCCAGCTGCGTTACTTCTTTATAGTTACTTCCGGAAAGGCCAAG AAAAACTTTCGTTCTTGAGGGCTGTTGGAAGAGGCGTATTGGCTTTTCCCATTGGAGCTTTGATCCATGCTGCTGCAGCTATTGTCTTAGGCGCACCTGT CGGCTCTCTGTATGTGGCATGTGTTTACACTTTGCACGCTGGCCAATCTTTTGTTGTTGGCTATAGGTACTTGTTGAGGACAATTAATTGGTCTCTTCTG ATGTCATCACTCACTGTTGTTCCTGTAGCTTCAGTATTTGGTTCATCGTGGACAGATTGGCAACGCTTATTAGCATGTACAAAGCCAAATGGTACATTGG AATATATGCTTTGCATACCAGCACATGGTGCAGTAATTGGAGCCTGGCTAGGAGCTTGGCCTATGCCACTCGACTGGGAAAGGCCATGGCAGGAGTGGCC AATCTGCGTTACGTACGGGTCTTTAGCAGGTTACGTGATGGGAATGGTGGCATCATTTGTCTTGGTGCTTGCTACCAGTGCTGGAGCAGGAAGACGACGT GGTCTGAAAGGAGATTAG
AA sequence Show only first row Show all	>Lus10015585 pacid=23145929 polypeptide=Lus10015585 locus=Lus10015585.g ID=Lus10015585.BGIv1.0 annot-version=v1.0 MLRLGFAEFSSPKHRLTSFSAAHRWSILRPVVARHSTPATAFLHKLSSMKGKKKNIMHKEASAPVEVSECNVSILQTLLVHAICGLGLAIGLWISHRWYS INLVSHSSDTIFLIWIVETPAALLLYSYFRKGQEKLSFLRAVGRGVLAFPIGALIHAAAAIVLGAPVGSLYVACVYTLHAGQSFVVGYRYLLRTINWSLL MSSLTVVPVASVFGSSWTDWQRLLACTKPNGTLEYMLCIPAHGAVIGAWLGAWPMPLDWERPWQEWPICVTYGSLAGYVMGMVASFVLVLATSAGAGRRR GLKGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16040			unknown protein		Lus10015585 [exp]	0	1
AT1G01770			unknown protein		Lus10036349 [exp]	1.0	0.9095
AT4G10030			alpha/beta-Hydrolases superfam...		Lus10006176 [exp]	1.4	0.8476
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10011122 [exp]	3.9	0.8151
AT4G39230			NmrA-like negative transcripti...		Lus10026351 [exp]	5.2	0.8206
					Lus10033126 [exp]	8.8	0.8057
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10003460 [exp]	9.6	0.8200
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10036939 [exp]	11.7	0.7832
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10015703 [exp]	13.0	0.7964
AT1G70740			Protein kinase superfamily pro...		Lus10001595 [exp]	13.2	0.7701
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	13.9	0.8083

Compare expression of checked genes

Lus10015585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.