Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24590 303 / 2e-97 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT3G49530 301 / 2e-96 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT4G35580 282 / 2e-88 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT1G33060 258 / 6e-78 NAC ANAC014 NAC 014 (.1.2) AT3G17730 195 / 9e-59 NAC ANAC057 NAC domain containing protein 57 (.1) AT5G17260 197 / 8e-57 NAC ANAC086 NAC domain containing protein 86 (.1) AT1G65910 201 / 9e-57 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G03200 193 / 3e-55 NAC ANAC045 NAC domain containing protein 45 (.1) AT3G10500 193 / 1e-54 NAC ANAC053 NAC domain containing protein 53 (.1) AT5G04410 192 / 3e-54 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032919 [exp] 902 / 0 AT5G24590 314 / 7e-102 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10033251 [exp] 286 / 2e-89 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10008285 [exp] 285 / 5e-89 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10010148 [exp] 253 / 1e-76 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10042284 [exp] 199 / 2e-59 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 199 / 3e-59 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 199 / 6e-56 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10037939 [exp] 190 / 8e-55 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10020794 [exp] 199 / 9e-55 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G004100 [exp] 401 / 6e-134 AT3G49530 309 / 5e-99 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) Potri.012G007500 [exp] 355 / 8e-116 AT5G24590 306 / 4e-98 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Potri.011G149300 [exp] 280 / 4e-86 AT1G33060 387 / 2e-125 NAC 014 (.1.2) Potri.001G452700 [exp] 262 / 1e-79 AT1G33060 415 / 7e-137 NAC 014 (.1.2) Potri.012G126500 [exp] 194 / 6e-57 AT1G12260 348 / 3e-118 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.010G174600 [exp] 191 / 4e-56 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.015G030200 [exp] 187 / 1e-55 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.015G127400 [exp] 188 / 1e-54 AT1G12260 378 / 4e-130 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) Potri.003G089800 [exp] 188 / 1e-54 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.008G081500 [exp] 187 / 1e-54 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10015587 pacid=23145890 polypeptide=Lus10015587 locus=Lus10015587.g ID=Lus10015587.BGIv1.0 annot-version=v1.0 ATGGCAGTACTGCCGTTGAATTCTCTCCCTTTGGGATTCCGGTTCCGTCCAACTGACGAAGAGCTTGTTGATTTCTACTTGCGATTGAAGATCAATAACC AGCACGAGGATGTCAGAGTTATTCGTGAAATCGATGTCTGCAAATGGGAGCCCTGGGATTTACCTGATTTGTCGATCGTAAAGACCAAAGATCCGGAGTG GTTCTTCTTCTGTCCACTGGACCGGAAGTACCCTAACGGAAGCAGATTGAACAGAGCCACCGTAAAAGGCTACTGGAAAGCTACAGGGAAGGATCGGAGG ATCAAGTCCGGTCAAAACCTGATCGGGATGAAGAAGACACTCGTGTTCTACACTGGCCGAGCTCCCAAGGGCCAGCGTACTCACTGGGTCATGCATGAGT ATCGCACCACGGAGGATGACCTTAACGGAACTAAGCCTGGCCAGAGTCCTTTTGTTCTCTGTCGCTTGTTTAAGAAACAAGATCCGACTGTTGAGGACTT GAACTCTGATGAAGTTGCTGAGGCAACTGTGTTGTCCCATACTACTGCGACCACAACTGCTCATTCTTCTCCAGATGTTACGCAGTCGCAAACTCACTCC GACTTACCTTTGCCTGCTGATTCCCCACTTGATACAACTTCTGTCCCTGCAGTTGTAGAGTCTTTCCAGTCTCCGTCAAGGGTTCAGAATCCAACAATGC TGAATGTGGCGCCTGTGGAGAGGGAGATGCAGCTCAAAGAACCATTCAATTGGTTTGATGTACCACCTCCTGAGTCGCTAGATGACAAGATTTTCTCCCC ATTGCACACTCAGGTGCAAGCAGAGTTGGGTTCTTCTTGCGGGTATTACCCCATCAACAGCAATCCAGCCAATAAATTTACTGACGAAAACGAAGCTGAC TTGTCTGAATTCCTGGACTCTATCCTTGACTATTCCTATGATGATCAAAGCAGGCCAGGTGCTGAAATCGGACAGAATATGGTTGGTTCAATAGATCCAG TTGAGGATAGAAAGCCTACAATGCAAGTTGAAGAAACTCCGGGAGTAGCTGACACAAATCTGCTCCTGGACAGCAAAATGATTGAAAACTTCAAGTACTT TCAGGCTGCTCCCTGTGATGATGGCCAATGGAGCAGACTTGGACACCTGACCGGAGACCAATTCAATAACCTTGGGGAAGCAAGTAGCGACATCAATCAG GTTGCAAGTGTCAGCTCCAACGAAATTGAAGCAAGTGGCAATATCAAAATTAGGAGCCGTGACCCGCAGAAACAGTATTCTGTAAACTTTGGTGCTCAGG GTGATGCACATAGAAGACTCCAGCTACAGACAAAGCTATGTGCCCCCTCTTGTGACACCAATGAAAAGTCAAGTGATGGAAGCTTCCTTTCAGAAGAAGT TGAATCCAGAAAAGATCATATGGAGGTTAGAAGGTGCGGCTGGGAAACAAATGAAGGGATCCAAGGACTTGGGAAGGAAGAACGCTACTGCTGCAGTGTC GAAGAAGTTCCGGTTCATCGTGATGAAGGCTTCCTCAACGTTTGGACTAGTGAGGTCTGGTTTTACGTTGAGGGTAGTGTTGCTGATGGTGTTTTTTGTA ACAGCAGTGAGCGCATGGAGATGCATTAG
AA sequence Show only first row Show all	>Lus10015587 pacid=23145890 polypeptide=Lus10015587 locus=Lus10015587.g ID=Lus10015587.BGIv1.0 annot-version=v1.0 MAVLPLNSLPLGFRFRPTDEELVDFYLRLKINNQHEDVRVIREIDVCKWEPWDLPDLSIVKTKDPEWFFFCPLDRKYPNGSRLNRATVKGYWKATGKDRR IKSGQNLIGMKKTLVFYTGRAPKGQRTHWVMHEYRTTEDDLNGTKPGQSPFVLCRLFKKQDPTVEDLNSDEVAEATVLSHTTATTTAHSSPDVTQSQTHS DLPLPADSPLDTTSVPAVVESFQSPSRVQNPTMLNVAPVEREMQLKEPFNWFDVPPPESLDDKIFSPLHTQVQAELGSSCGYYPINSNPANKFTDENEAD LSEFLDSILDYSYDDQSRPGAEIGQNMVGSIDPVEDRKPTMQVEETPGVADTNLLLDSKMIENFKYFQAAPCDDGQWSRLGHLTGDQFNNLGEASSDINQ VASVSSNEIEASGNIKIRSRDPQKQYSVNFGAQGDAHRRLQLQTKLCAPSCDTNEKSSDGSFLSEEVESRKDHMEVRRCGWETNEGIQGLGKEERYCCSV EEVPVHRDEGFLNVWTSEVWFYVEGSVADGVFCNSSERMEMH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10015587 [exp]	0	1
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Lus10000539 [exp]	1.7	0.9549
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10035840 [exp]	2.6	0.9597
AT4G38270		GAUT3	galacturonosyltransferase 3 (....		Lus10026546 [exp]	2.8	0.9507
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10032919 [exp]	2.8	0.9583
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10027337 [exp]	5.8	0.9114
AT2G23810		TET8	tetraspanin8 (.1)		Lus10015494 [exp]	6.3	0.9475
AT4G28400			Protein phosphatase 2C family ...		Lus10040565 [exp]	6.5	0.9356
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10013832 [exp]	7.3	0.9076
AT1G59710			Protein of unknown function (D...		Lus10030804 [exp]	7.5	0.9054
AT1G77480			Eukaryotic aspartyl protease f...		Lus10018146 [exp]	7.7	0.8975

Compare expression of checked genes

Lus10015587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.