Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33140 351 / 3e-125 PGY2 PIGGYBACK2, Ribosomal protein L6 family (.1) AT1G33120 351 / 3e-125 Ribosomal protein L6 family (.1) AT4G10450 341 / 2e-121 Ribosomal protein L6 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032962 [exp] 387 / 2e-139 AT1G33140 345 / 4e-123 PIGGYBACK2, Ribosomal protein L6 family (.1) Lus10005286 [exp] 387 / 2e-139 AT1G33140 347 / 1e-123 PIGGYBACK2, Ribosomal protein L6 family (.1) Lus10032918 [exp] 337 / 3e-119 AT1G33140 301 / 9e-105 PIGGYBACK2, Ribosomal protein L6 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G147700 [exp] 362 / 2e-129 AT4G10450 331 / 2e-117 Ribosomal protein L6 family (.1) Potri.001G454101 [exp] 361 / 4e-129 AT1G33140 331 / 1e-117 PIGGYBACK2, Ribosomal protein L6 family (.1) Potri.001G453900 [exp] 361 / 4e-129 AT1G33140 331 / 1e-117 PIGGYBACK2, Ribosomal protein L6 family (.1) Potri.001G454000 [exp] 360 / 6e-129 AT1G33140 331 / 2e-117 PIGGYBACK2, Ribosomal protein L6 family (.1) Potri.011G148700 [exp] 359 / 1e-128 AT1G33140 330 / 4e-117 PIGGYBACK2, Ribosomal protein L6 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00347 [flax] [poplar] Ribosomal_L6 Ribosomal protein L6
Representative CDS sequence Show only first row Show all	>Lus10015588 pacid=23145911 polypeptide=Lus10015588 locus=Lus10015588.g ID=Lus10015588.BGIv1.0 annot-version=v1.0 ATGAAGACCATCCTCTCATCGGAGACAATGGACATCCCCGACGGCGTGAAGATCAAGGTCCACGCCAAGATCATTGAGGTCGAAGGTCCACGAGGCAAGC TCGTTCGTGACTTCAAGCATCTCAACCTCGATTTCCAGCTGATCAAGGACGAGGAGACCGGAAGCCGCAAGCTGAAGATCGACGCATGGTTCGGATCCAG GAAGACCAGCGCCTCTATCCGTACCGCTCTCAGCCACGTTCAGAATCTCATCACTGGGGTCACCAAGGGCTACCGTTACAAGATGCGTTTCGTGTATGCC CATTTCCCCATCAACGCCTCCATCACCAACACCAACAAGGCTATTGAGATCCGTAACTTTCTCGGAGAAAAGCGGGTGAGGAAGGTTGATATGCTTGATG GTGTGACTGTTATCCGATCCGAGAAGGTGAAGGATGAGTTGGTTCTGGATGGTAACGATGTTGAGCTTGTTTCACGATCTTGTGCCCTAATCAACCAGAA ATGCCATGTGAAGAACAAGGATATCAGAAAGTTTCTTGACGGTATCTATGTCAGCGAGAAAGGAACAATCGTTGAGGAGGAATGA
AA sequence Show only first row Show all	>Lus10015588 pacid=23145911 polypeptide=Lus10015588 locus=Lus10015588.g ID=Lus10015588.BGIv1.0 annot-version=v1.0 MKTILSSETMDIPDGVKIKVHAKIIEVEGPRGKLVRDFKHLNLDFQLIKDEETGSRKLKIDAWFGSRKTSASIRTALSHVQNLITGVTKGYRYKMRFVYA HFPINASITNTNKAIEIRNFLGEKRVRKVDMLDGVTVIRSEKVKDELVLDGNDVELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTIVEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10015588 [exp]	0	1
AT1G74050			Ribosomal protein L6 family pr...		Lus10039084 [exp]	1.4	0.9816
AT5G48760			Ribosomal protein L13 family p...		Lus10032599 [exp]	1.4	0.9807
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10013183 [exp]	2.8	0.9762
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10033607 [exp]	3.0	0.9782
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10031021 [exp]	3.9	0.9751
AT5G60670			Ribosomal protein L11 family p...		Lus10041308 [exp]	4.4	0.9583
AT2G09990			Ribosomal protein S5 domain 2-...		Lus10035133 [exp]	4.7	0.9581
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10004743 [exp]	4.9	0.9730
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10015123 [exp]	5.3	0.9673
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10012463 [exp]	5.9	0.9729

Compare expression of checked genes

Lus10015588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.