Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54090 780 / 0 DNA mismatch repair protein MutS, type 2 (.1) AT1G65070 214 / 3e-58 DNA mismatch repair protein MutS, type 2 (.1.2) AT3G24320 94 / 3e-19 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT3G18524 81 / 3e-15 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G25540 78 / 2e-14 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT4G17380 74 / 5e-13 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G24495 71 / 3e-12 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT4G02070 70 / 6e-12 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G20475 60 / 8e-09 ATMSH5 MUTS-homologue 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032917 [exp] 1621 / 0 AT5G54090 808 / 0.0 DNA mismatch repair protein MutS, type 2 (.1) Lus10025647 [exp] 231 / 1e-63 AT1G65070 892 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Lus10018187 [exp] 217 / 1e-58 AT1G65070 899 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Lus10005743 [exp] 84 / 5e-16 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10014462 [exp] 84 / 5e-16 AT3G24320 1506 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Lus10027452 [exp] 81 / 9e-16 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10023718 [exp] 82 / 2e-15 AT3G24320 1594 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Lus10042967 [exp] 76 / 8e-14 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10032469 [exp] 73 / 9e-13 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G005000 [exp] 957 / 0 AT5G54090 847 / 0.0 DNA mismatch repair protein MutS, type 2 (.1) Potri.004G041900 [exp] 246 / 7e-69 AT1G65070 924 / 0.0 DNA mismatch repair protein MutS, type 2 (.1.2) Potri.010G065000 [exp] 90 / 6e-18 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) Potri.015G142900 [exp] 84 / 3e-16 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.014G121701 [exp] 80 / 7e-15 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.012G060000 [exp] 79 / 1e-14 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.006G156314 [exp] 73 / 7e-13 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G159200 [exp] 73 / 1e-12 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.001G156200 [exp] 66 / 2e-10 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.011G089500 [exp] 58 / 2e-08 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00488 [flax] [poplar] MutS_V MutS domain V
Representative CDS sequence Show only first row Show all	>Lus10015589 pacid=23145914 polypeptide=Lus10015589 locus=Lus10015589.g ID=Lus10015589.BGIv1.0 annot-version=v1.0 ATGGCGACGGGGATGCAGCAACGGCGGGACGGCGGCGACGATGAGACGGTGTGGAAAGAAAGGAGCAAGGACAAACTGAGGCGCGCTACATGTATGGATA TGGCGCAGGCGACACCGTGTCATCACCGGACGTTTCGCCAGAATTCTCCACTGATTATCAAATCCGATTTCCTACTCACCGACGTTTGTTCATCAACCGG AAGGCTGTACACGACGTCGTTGAGGGTGAAGAAGAAGAACCAGAGTCGTCATCGTCAACTCCGTTTTCAACTCAAATTCCCATCTCAATCGCATCTTTGC TCAGCTCCGCAGCTACAATGCCGTGCTTCTGCTTTCACGAATTCTTCAGGTCATGAGAAATCAGGTGTTCGCTTCCACAGTCTCATGCTGCTGGAATGGG ACAAGCTCTGCGACTTGGTCGCTTCCTTTGCCTCTACTTCATTGGGACGCCAAGCCACTATCGCACAATTATGGAAACTCGACAATAGCTACGACGACAG TTTGAGGCTGTTACGAGAAACGAACGCCGCTCTGCAAATGCGTGGCCACGGCGGTTGCCGCTTGGACTTCGTCGGCCTGGACCTCCTTCTGGTGGAATCT GCAATACAACATGCTCGGAGGAGATTAAATGTTGGTGGAAATGAAGCGATAGCGATTGCTGCTCTGCTTGATTCTGCTCTTTGCTTGCAGCTTAACCTTA AATCAACGGTTAAGGAAGATGCCGATTGGTACAGCCGTTTTCTTCCTCTTTCGCAAGTGATGATGGATATGGTCATAAACCGGTCTCTGGTTAAAATGAT CCAACAAGTTGTTGATGAAGATGGCTCTATCAAAGATTCTGCGAGTTCTGCCTTAAAACGATCACGTGCTCAGGTCCGCATGCTTGAGGAAAAGCTATAC CGGTTAATGGACACCTTAATCAGGAATCAGGAAAACGATACATCCTTTCTGGAAGTAAGTAGTGTAGATGGAAGATGGTGTGTAAAATCGGGACCTGGTC AGCTAACAAATGTTAAGGGCCTTTTGTTGTCCAGGCAATCAGGCAGAGGAAGCATTATAGAGCCACTCTCTGCAGTTCCTTTAAATGATGAGTTGCAACA GGCAAGATTATCAGTGGCACAAGCAGAAGCTGATGTGCTTTCCATGCTAACGGAAAAGATTCGAGATGATGTTGTTGACATCGAGAAAGTACTAGAGAGT GTGGTTCAGCTGGATGCTATAAATGCCCGAGCAAGTTGTAGTGATTCATATGGAGGTGCCTGCCCTGATCTTTATCTACCTGAAGACATGGATGAGACAG ATGCAGCTTGTTCTTCTTTACCAGGGAAGAACGCATCAAATTCCATTAAGAGAGAGTGGCTATTATATATGCCTGAAGCTTCCCATCCTTTGTTGCTTCA GCAGCATAAGCAACGCCTTCAGGAGGCAAAGAAGGATATTAGAAATGCTTCTGCTAGAAAAATGCAAGGAGATAGTGCGTTACTGAAGGGAGAAGCAAGA GTGGCTAGTTCACCAACAGAAGTGCAGGACACTGGATCAGAACAGCCACCTCCAGTTCCTGTTGATTTCTTCATAGAGAAAAGAACAAGAGTACTTGTTA TAACTGGCCCAAACACTGGGGGTAAAACGATATGCTTGAAGACTGTTGGATTGGCTGCTATGATGGCTAAGTCAGGTCTTCATATCCTATCCTCCGAATC TGTGCAAATTCCTTGGTTTGATTCTATTTTTGCTAACATTGGCGAAGAACAATCTTTGTCTGAATCTTTGTCCACATTTTCTGGCCGCTTAAAACAGATA ATTGAAATTCGGTCAGAATCAACAAGCCAATCATTGGTACTACTTGATGAAGTTGGGGCATGGACAAACCCTCTTGAAGGTGCTGCACTAGGCATGGCAA TGCTGGAATCTTTTGCTGATAGTGGTGCTTTACTGACGCTAGCTACAACACATCATGGCGAACTAAAATCACTAAAATACAGTAATGATGTCTTTGAAAA TGCATCTATGGAGTTCGATGAAGAGAATTTGAAGCCCACTTATAAGATTCTGTGGGGAGTACCAGGCCGATCAAATGCCATAAATATATCTGAAAAGCTA GGATTGCCTAGTACCATTGTTTGTGATGCTAGAGCGTGTATTGGTGCTTCTAACGAGGAGATCAATGCGGTCATAATTGGCATGGAAAGATCCAAGCAGG ATTTTCGAGATCTTTTAAATGAGGCCGAACATCATCTAGGGCTCTCAAGGAATATCCATAAAAGTTTGTTACAGGCTAAAAGAAGGATCATGGAGCATGC TGCAAGTCAAAGATACAGCAACGTGCGGGAAATATCTGAAGCTGCCGCCTTGGCACGTTCTACTATTCGGAAGAAAGTACGAGAGCTTCAAGCTCGTGCA GCACATACATCTACATCAGAGAAAACACAGCTAGTAACTAGTGAAAAACAGAGTTTTCCCACACCGGCCGACAAACTTGCTGCAAAAAATGATGGGTTAT CACCAGGGAACATCACAAAGCAAGTACCTCCAGAGAGGATGTGGCTTCCCAAGGTGGGTGAGATGGTTCAAGTTTCCAGGTTAGGGAGGAAAGCAACAGT ATTGACAGTGGATCCAGCAAAAGAAGATGTAGTTGTTCAAGCTGGTAACATGAAATTGAAGCTAAAATTAGCTGATATTCGGACTTGA
AA sequence Show only first row Show all	>Lus10015589 pacid=23145914 polypeptide=Lus10015589 locus=Lus10015589.g ID=Lus10015589.BGIv1.0 annot-version=v1.0 MATGMQQRRDGGDDETVWKERSKDKLRRATCMDMAQATPCHHRTFRQNSPLIIKSDFLLTDVCSSTGRLYTTSLRVKKKNQSRHRQLRFQLKFPSQSHLC SAPQLQCRASAFTNSSGHEKSGVRFHSLMLLEWDKLCDLVASFASTSLGRQATIAQLWKLDNSYDDSLRLLRETNAALQMRGHGGCRLDFVGLDLLLVES AIQHARRRLNVGGNEAIAIAALLDSALCLQLNLKSTVKEDADWYSRFLPLSQVMMDMVINRSLVKMIQQVVDEDGSIKDSASSALKRSRAQVRMLEEKLY RLMDTLIRNQENDTSFLEVSSVDGRWCVKSGPGQLTNVKGLLLSRQSGRGSIIEPLSAVPLNDELQQARLSVAQAEADVLSMLTEKIRDDVVDIEKVLES VVQLDAINARASCSDSYGGACPDLYLPEDMDETDAACSSLPGKNASNSIKREWLLYMPEASHPLLLQQHKQRLQEAKKDIRNASARKMQGDSALLKGEAR VASSPTEVQDTGSEQPPPVPVDFFIEKRTRVLVITGPNTGGKTICLKTVGLAAMMAKSGLHILSSESVQIPWFDSIFANIGEEQSLSESLSTFSGRLKQI IEIRSESTSQSLVLLDEVGAWTNPLEGAALGMAMLESFADSGALLTLATTHHGELKSLKYSNDVFENASMEFDEENLKPTYKILWGVPGRSNAINISEKL GLPSTIVCDARACIGASNEEINAVIIGMERSKQDFRDLLNEAEHHLGLSRNIHKSLLQAKRRIMEHAASQRYSNVREISEAAALARSTIRKKVRELQARA AHTSTSEKTQLVTSEKQSFPTPADKLAAKNDGLSPGNITKQVPPERMWLPKVGEMVQVSRLGRKATVLTVDPAKEDVVVQAGNMKLKLKLADIRT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54090			DNA mismatch repair protein Mu...		Lus10015589 [exp]	0	1
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Lus10042915 [exp]	2.0	0.9374
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10005521 [exp]	2.4	0.9127
AT1G80770		PDE318	pigment defective 318, P-loop ...		Lus10043354 [exp]	3.5	0.8786
AT3G48110		EDD1	EMBRYO-DEFECTIVE-DEVELOPMENT 1...		Lus10028211 [exp]	4.9	0.8875
AT4G31210			DNA topoisomerase, type IA, co...		Lus10020186 [exp]	5.5	0.9184
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Lus10038820 [exp]	7.4	0.8654
AT3G17310		DRM3, AtDRM3	domains rearranged methyltrans...		Lus10043099 [exp]	9.2	0.8554
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Lus10024387 [exp]	13.9	0.8581
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	15.0	0.8599
AT5G04710			Zn-dependent exopeptidases sup...		Lus10034142 [exp]	18.7	0.8655

Compare expression of checked genes

Lus10015589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.