Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24600 290 / 3e-99 Protein of unknown function, DUF599 (.1.2) AT3G18215 233 / 1e-76 Protein of unknown function, DUF599 (.1) AT4G31330 149 / 5e-44 Protein of unknown function, DUF599 (.1) AT5G10580 137 / 2e-39 Protein of unknown function, DUF599 (.1.2) AT5G46060 134 / 6e-38 Protein of unknown function, DUF599 (.1) AT5G24790 122 / 2e-33 Protein of unknown function, DUF599 (.1) AT5G43180 85 / 2e-19 Protein of unknown function, DUF599 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032916 [exp] 499 / 0 AT5G24600 292 / 6e-100 Protein of unknown function, DUF599 (.1.2) Lus10013947 [exp] 278 / 9e-94 AT5G24600 272 / 6e-92 Protein of unknown function, DUF599 (.1.2) Lus10005272 [exp] 270 / 1e-90 AT5G24600 267 / 8e-90 Protein of unknown function, DUF599 (.1.2) Lus10009010 [exp] 242 / 3e-80 AT3G18215 317 / 2e-110 Protein of unknown function, DUF599 (.1) Lus10009640 [exp] 174 / 5e-54 AT3G18215 224 / 4e-74 Protein of unknown function, DUF599 (.1) Lus10026976 [exp] 156 / 1e-46 AT4G31330 347 / 2e-122 Protein of unknown function, DUF599 (.1) Lus10013943 [exp] 143 / 1e-41 AT5G46060 212 / 5e-69 Protein of unknown function, DUF599 (.1) Lus10005266 [exp] 142 / 4e-41 AT5G46060 207 / 4e-67 Protein of unknown function, DUF599 (.1) Lus10020172 [exp] 117 / 3e-32 AT4G31330 271 / 3e-93 Protein of unknown function, DUF599 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G001300 [exp] 308 / 3e-106 AT5G24600 322 / 4e-112 Protein of unknown function, DUF599 (.1.2) Potri.015G001500 [exp] 306 / 2e-105 AT5G24600 316 / 7e-110 Protein of unknown function, DUF599 (.1.2) Potri.006G278000 [exp] 150 / 2e-44 AT4G31330 371 / 1e-131 Protein of unknown function, DUF599 (.1) Potri.001G372900 [exp] 148 / 2e-43 AT5G46060 145 / 6e-43 Protein of unknown function, DUF599 (.1) Potri.011G059400 [exp] 124 / 3e-34 AT5G46060 151 / 3e-45 Protein of unknown function, DUF599 (.1) Potri.016G137800 [exp] 98 / 4e-24 AT5G43180 174 / 5e-54 Protein of unknown function, DUF599 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04654 [flax] [poplar] DUF599 Protein of unknown function, DUF599
Representative CDS sequence Show only first row Show all	>Lus10015590 pacid=23145924 polypeptide=Lus10015590 locus=Lus10015590.g ID=Lus10015590.BGIv1.0 annot-version=v1.0 ATGGAGCAGAGCCTACTCGATTGCACATTGGTCCCTCTAGGACTGGTGATGATGATCTCCTACAACCTATGGCTCCTGTTCCAAATACTCAGCCACCCTT CCCACACCATCATCGGCGTCAATGCCGTTAACCGCGGTTTCTGGGTTCGCGCCATGATGGAGGACACGTCCAAGAACGGAGTTCTTGCAGTTCAGACGCT GAGGAACAACATAATGGCGTCGACTCTATTAGCATCGACGGCGATCATGCTCAGCTCTCTGATCGCCATGCTTATGGTGGGGAACAAATCGGGCAACGTG CGGCTGGTTTTGGTGCTGATGGGAGACACAAGTGACAAGATTCTCTCCTTAAAGTTCTTCTCGATACTTCTCTGCTTCCTGCTGGCATTTCTCTTCACTG TACAGTCCATAAGGTACTACAGCCACGCCAGCTTCCTGATCAACGTCCCCGTAATGGACAAGAAGAGGATGATCGAAATGGGAGGCAGCGATCACCATCC TCACCATCTGACGGTGGATTATGTGGTGAGGTCTGTGAACAGAGGAGGCTATTTCTGGTCGTTGGGACTGCGTGCCTTCTACTTCTCCCTGCCTCTGTTT ATGTGGATATTCGGACCGATTCCGATGTTCCTGTGCTGCGTTGTGCTGGTTTCCACTCTCTACTTCCTCGACATTACGTTCCAGGATTATGTCGCTTGTG CTTCTATTGATGATGATGGTGCTCTTGGAGAGAGTGAGGATGGAGGTCGGGTTCTTATGAACCACCACGTCCACGATTCTCCCAAACTCACAGCCTGCCA CCAAGTTTGA
AA sequence Show only first row Show all	>Lus10015590 pacid=23145924 polypeptide=Lus10015590 locus=Lus10015590.g ID=Lus10015590.BGIv1.0 annot-version=v1.0 MEQSLLDCTLVPLGLVMMISYNLWLLFQILSHPSHTIIGVNAVNRGFWVRAMMEDTSKNGVLAVQTLRNNIMASTLLASTAIMLSSLIAMLMVGNKSGNV RLVLVLMGDTSDKILSLKFFSILLCFLLAFLFTVQSIRYYSHASFLINVPVMDKKRMIEMGGSDHHPHHLTVDYVVRSVNRGGYFWSLGLRAFYFSLPLF MWIFGPIPMFLCCVVLVSTLYFLDITFQDYVACASIDDDGALGESEDGGRVLMNHHVHDSPKLTACHQV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24600			Protein of unknown function, D...		Lus10015590 [exp]	0	1
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10037934 [exp]	4.0	0.8625
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Lus10030773 [exp]	4.5	0.8147
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10011976 [exp]	6.3	0.7943
AT3G51810		AT3, GEA1, ATEM...	GUANINE NUCLEOTIDE EXCHANGE FA...		Lus10005044 [exp]	7.3	0.7294
AT1G62340		ALE1	ABNORMAL LEAF-SHAPE 1, ABNORMA...		Lus10015559 [exp]	8.0	0.8034
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10030750 [exp]	8.2	0.7818
AT3G58480			calmodulin-binding family prot...		Lus10029323 [exp]	8.7	0.7739
AT2G21950		SKIP6	SKP1 interacting partner 6 (.1...		Lus10030606 [exp]	10.2	0.7881
					Lus10032429 [exp]	11.0	0.7573
AT1G07950		MED22B	Surfeit locus protein 5 subuni...		Lus10023466 [exp]	12.8	0.8028

Compare expression of checked genes

Lus10015590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.