Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24620 341 / 5e-116 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38660 245 / 3e-79 Pathogenesis-related thaumatin superfamily protein (.1.2) AT2G17860 234 / 4e-76 Pathogenesis-related thaumatin superfamily protein (.1) AT4G24180 233 / 1e-75 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT1G75800 231 / 7e-74 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38670 228 / 9e-74 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT1G19320 227 / 1e-73 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75050 226 / 2e-73 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 225 / 4e-73 PR-5, PR5 pathogenesis-related gene 5 (.1) AT1G75030 224 / 2e-72 ATLP-3 thaumatin-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032914 [exp] 446 / 7e-160 AT5G24620 353 / 1e-121 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 252 / 1e-82 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028448 [exp] 251 / 3e-82 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10032726 [exp] 246 / 4e-81 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1) Lus10025055 [exp] 235 / 2e-76 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041899 [exp] 237 / 4e-76 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028447 [exp] 236 / 4e-76 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 235 / 8e-76 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10013561 [exp] 233 / 8e-75 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G000800 [exp] 347 / 5e-120 AT5G24620 351 / 4e-120 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.012G004800 [exp] 345 / 1e-118 AT5G24620 358 / 1e-122 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.004G173200 [exp] 251 / 1e-81 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132500 [exp] 251 / 1e-81 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G112700 [exp] 248 / 4e-81 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G112600 [exp] 245 / 2e-79 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.014G040700 [exp] 236 / 3e-77 AT1G75030 342 / 5e-120 thaumatin-like protein 3 (.1) Potri.009G132200 [exp] 238 / 5e-77 AT4G38670 410 / 2e-145 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Potri.005G240900 [exp] 237 / 1e-76 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G241000 [exp] 234 / 2e-75 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10015591 pacid=23145896 polypeptide=Lus10015591 locus=Lus10015591.g ID=Lus10015591.BGIv1.0 annot-version=v1.0 ATGAATTGGAACACGTATCTCATTCTCTCCGTGTTTGTTGTATCGCTCCGCTGCTATTCCTGCGCCTTCACCGTGGCCAACAACTGCCCGCATCCCATAT GGCCTGGAACCCTAGCGGGATCAGGCACCCCGCAGCTCCAGACCACAGGGTTCCGGCTGGAGCCAGGGCATATTGCGAGGATCCCCACCATTCCAGGCTG GTCAGGGCGCATATGGGCTAGGACCGGATGTTTGTTCAATGAGTCCGGAGTTGGGTCCTGTCAGACTGGCGACTGCGGAGGGAAGCTTCACTGTAGCGGT AGCGGGGCCACCCCGCCGGCTTCCCTCTTCGAGATAACATTCGCTAAAGGCGCTGACGACAAAGACTTCTACGATGTGAGTATTGTGGATGGATACAATC TGCCTATGGTTGCTTCGCCCACGGGCTTCCAAGGTGCTTGCAACGCTACCGGCTGCGCTTATGACCTCAACCTTGGTTGCCCGAAAGAGCTTCAGGTGGT TGGCAGCAGAACCGACGGGATAGACGGTGGAGGAGGAGTGATCGGATGCAAGAGCGCATGTGAAGCATTCGGCCTAGAGCAGTACTGCTGCAGCGGGCAG TACGCCAATCCAACAACCTGCAGGCCATCGTTCTACTCTTCCGTATTCAAGCGAGCCTGCCCCACCGCTTACAGCTATGCCTTTGATGATGGAACCAGCA CTTTCACCTGCAAAGCTTCCGACTACTCCATCATTTTCTGCCCTTCTAACAACAATAATGGCAATAACAGCAACTACAACAATCCCGACCCGACGACTGG TACGACCTCTTCCGACAGATGTGGTATTCCGATAATGCAGAAGAACAGCAAAGGGGAAGAGCAAGGGATTGTTTCTGCATCGAAGGAAAACCTGCATCTT AATATCTCAGTCCTGCACATGCTCATTATTGGCATATTCATATTGATCATTGTCTGA
AA sequence Show only first row Show all	>Lus10015591 pacid=23145896 polypeptide=Lus10015591 locus=Lus10015591.g ID=Lus10015591.BGIv1.0 annot-version=v1.0 MNWNTYLILSVFVVSLRCYSCAFTVANNCPHPIWPGTLAGSGTPQLQTTGFRLEPGHIARIPTIPGWSGRIWARTGCLFNESGVGSCQTGDCGGKLHCSG SGATPPASLFEITFAKGADDKDFYDVSIVDGYNLPMVASPTGFQGACNATGCAYDLNLGCPKELQVVGSRTDGIDGGGGVIGCKSACEAFGLEQYCCSGQ YANPTTCRPSFYSSVFKRACPTAYSYAFDDGTSTFTCKASDYSIIFCPSNNNNGNNSNYNNPDPTTGTTSSDRCGIPIMQKNSKGEEQGIVSASKENLHL NISVLHMLIIGIFILIIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24620			Pathogenesis-related thaumatin...		Lus10015591 [exp]	0	1
AT5G24620			Pathogenesis-related thaumatin...		Lus10032914 [exp]	1.0	0.9770
AT1G60360			RING/U-box superfamily protein...		Lus10022967 [exp]	3.5	0.9592
AT1G23530			unknown protein		Lus10030608 [exp]	3.7	0.9623
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10043075 [exp]	4.2	0.9613
AT2G30540			Thioredoxin superfamily protei...		Lus10040899 [exp]	4.2	0.9486
AT5G46530			AWPM-19-like family protein (....		Lus10004587 [exp]	4.6	0.9502
AT4G27960		UBC9	ubiquitin conjugating enzyme 9...		Lus10005072 [exp]	6.0	0.9454
AT1G75260			oxidoreductases, acting on NAD...		Lus10033210 [exp]	6.7	0.9567
AT5G18970			AWPM-19-like family protein (....		Lus10001116 [exp]	6.9	0.9495
AT5G67550			unknown protein		Lus10011544 [exp]	6.9	0.9531

Compare expression of checked genes

Lus10015591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.