Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24650 191 / 2e-59 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT3G49560 181 / 2e-55 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032913 [exp] 376 / 7e-132 AT5G24650 234 / 6e-77 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10032959 [exp] 253 / 1e-83 AT5G24650 295 / 6e-101 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10005289 [exp] 253 / 4e-83 AT5G24650 303 / 1e-103 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G004600 [exp] 231 / 3e-74 AT5G24650 262 / 2e-87 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.015G000600 [exp] 227 / 2e-73 AT5G24650 300 / 6e-103 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.001G360300 [exp] 40 / 0.0006 AT5G55510 254 / 2e-86 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.011G088500 [exp] 40 / 0.001 AT5G55510 252 / 1e-85 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Lus10015593 pacid=23145923 polypeptide=Lus10015593 locus=Lus10015593.g ID=Lus10015593.BGIv1.0 annot-version=v1.0 ATGACAGCAATGGAGGATGGCAAGCAAGGAGTACTTGTGTTGCCCAAAGCAAACAACCCCGGTCAGAACCCAATTCAGTCGTTGCAACTCAAGTTCAAAG AGATGGAGACTGGGTTCAAAACTTGGCTTTCCCAGCAGTCTACCCCTGTTGAGGTCGGCATCGTCACCGCCACCAACGCCATCCAGGGCGGTGCCATGGG TGGCCTCATGAGTAACTTCACTTCCAACATGGCCCCCTCCGTTCCTCCGCCGTCCACTGCCGCTGCTTCTCTTTCTGAGGGCATCGCCGCTTTCAATCAA GCCCAGGCGCTTGTAGGGGGTCCTTGGCTTCAAGCTCGGAATTTTGCTGTCATGGCGGGTGCCAATGCTGGTATTGCTTGTTTCATGAAACGATTAAGAG GCAAAGAGGATGTCCGGTCTAGGTTTACATTCTTGATTCCCATTTTTACTTCTCTTGCACCCCTTTCCTACTCTGTTCAATCTGCTAGTTACCTGTGTTT TGTCGTTGATGTTCTATTCAACAAGAGTAAATTGGTTCCTCGTGCATTTCTACCTGGATATTGCAGTATGGTGGCAGCTTTTGGCTCAGGAGTCTTGTTT ACATTGGTGAGTGGGACAGGTGGGATAGGTAACCCGAATCCTGCAGTGAATGCACTCTCTTCTGGCGTCTTCTTCGCAGCTATGCAAGGCGGCATATACC AGATAGGACAGAAGTTCTCTGAATACCAATCCCAATCCCAACCGCTGTCGCAATCTCAATCTCAACCTACAATCGAAGATGAGTATTATGCGAGGACGCG GTCTATGCTGGATAAGCTCGGCCTTCAGAACTACGAGAAGAATTTCAAGAAGGGTGCACTTAAAGATGTCAGTATCCCACCTGGACCAAGGCTGCTTATC CTGGACCATATTCAGAGGTTACTGCTCTCATCTTTATACACGGTGGTGTAG
AA sequence Show only first row Show all	>Lus10015593 pacid=23145923 polypeptide=Lus10015593 locus=Lus10015593.g ID=Lus10015593.BGIv1.0 annot-version=v1.0 MTAMEDGKQGVLVLPKANNPGQNPIQSLQLKFKEMETGFKTWLSQQSTPVEVGIVTATNAIQGGAMGGLMSNFTSNMAPSVPPPSTAAASLSEGIAAFNQ AQALVGGPWLQARNFAVMAGANAGIACFMKRLRGKEDVRSRFTFLIPIFTSLAPLSYSVQSASYLCFVVDVLFNKSKLVPRAFLPGYCSMVAAFGSGVLF TLVSGTGGIGNPNPAVNALSSGVFFAAMQGGIYQIGQKFSEYQSQSQPLSQSQSQPTIEDEYYARTRSMLDKLGLQNYEKNFKKGALKDVSIPPGPRLLI LDHIQRLLLSSLYTVV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24650			Mitochondrial import inner mem...		Lus10015593 [exp]	0	1
AT1G29370			Kinase-related protein of unkn...		Lus10020762 [exp]	1.4	0.8472
AT1G28530			unknown protein		Lus10015294 [exp]	3.5	0.8223
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10036857 [exp]	5.3	0.7856
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10030368 [exp]	5.5	0.7899
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10014836 [exp]	10.2	0.7621
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10043199 [exp]	11.2	0.7751
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10035831 [exp]	11.3	0.7763
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Lus10011432 [exp]	12.2	0.8094
AT3G19540			Protein of unknown function (D...		Lus10013891 [exp]	14.0	0.7409
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009682 [exp]	17.7	0.7919

Compare expression of checked genes

Lus10015593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.