Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27585 384 / 3e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G54100 372 / 2e-125 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT3G01290 56 / 2e-08 AtHIR2 hypersensitive induced reaction 2, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G51570 53 / 2e-07 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032909 [exp] 552 / 0 AT4G27585 498 / 4e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10032910 [exp] 89 / 9e-20 ND / Lus10015032 [exp] 54 / 1e-07 AT5G51570 532 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10038907 [exp] 53 / 2e-07 AT5G51570 529 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10033099 [exp] 44 / 0.0002 AT5G62740 533 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G005500 [exp] 377 / 6e-127 AT4G27585 463 / 3e-162 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G001900 [exp] 373 / 2e-125 AT4G27585 499 / 2e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G009800 [exp] 296 / 1e-95 AT4G27585 382 / 3e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G011345 [exp] 180 / 3e-52 AT4G27585 268 / 2e-87 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G010001 [exp] 176 / 2e-51 AT4G27585 245 / 6e-79 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G129000 [exp] 53 / 2e-07 AT5G51570 480 / 4e-173 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.017G078000 [exp] 42 / 0.0009 AT5G62740 518 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [flax] [poplar] SPFH PF01145 [flax] [poplar] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Lus10015597 pacid=23145916 polypeptide=Lus10015597 locus=Lus10015597.g ID=Lus10015597.BGIv1.0 annot-version=v1.0 ATGCCAAAAGAGGTTAGGATTTTGGCTGTCCAGTTGGCTCTGATCAGTGTGATGGACCGATCCTCATCAATAGACCGACTTAGAATATTGTTGGAAAGCC ATGCTCTTGTTTCTTTGGAAATTTTATGGGACGATGATCTCCCACTTCCTCTAATTCCATGGGGTCAACTGCTGAAGGATTTGCTCGACGATGCTTCTTG TCTCCATTCTCATCTCGAAGTGGGGTTTTGGTGTGACAAATCTTCCGCTGAAGAAGCAGAGATCAGGAGAAAGCGAGTGAGAGCAACTGTCCTTCCGTCA GAGTCTATCGCCCCATTTCCGCCGCCGATCCTGAAAGAATTCGAATCGATTAACCTCAGATGTCAGGTTTTCAGTGATTCCCTATTACGGTTGGGTGTCA TTTGCCATTGTTTGATGACTGTGAGATTGATGAGTACCTTCAAAATGTGGAGAAGTAGCAGCAGTCGTTTTCTGAAGCAAACCTTTCAATTCAGGCAGCA GGCAGTGGAACAGCTGACCGAATTGCCCAAACTCCCTACCCTCTTTAATCATACTGCTCCAATATCCACTTCATCTGCTCCCAGCTCCATCTCCCATGCC CGTCTGTCTTCCCTTCCCTTACTACGGAGTCCCCTCTCTTCCCCCTTCTCTGTTGTCCCTGTCCGCCATATCCGCTCCAGTACCGGTGAATTGGGGTGTC CTATCACCAAGGATAATGTCAGCATTCTTATTGATGGTGTTCTCTATGTCAAGATTATTGATCCTAAATTGGCTTCTTATGGAGTGGAGAACCCAATCTA TGCTGTTATTCAGTTGGCGCAGACCACCATGCGTAGTGAGCTTGGTAAAATTACACTTGATAAGACCTTTGAGGAACGTGACACTCTGAACGAGAAAATA GTGGAGGCCATTAATGTTGCTGCAAGTGACTGGGGTCTCCAATGCCTTCGATATGAAATAAGGGATATATCTCCACCACGTGGAGTGAGAGTAGCCATGG AGATGCAGGCAGAAGCTGAACGTAAAAAGAGGGCCCAAGTTCTTGAGTCTGAAGGAGAGAGGCAGGCTAACATTAATATTGCTGATGGAAGGAAACTTTC TGCTATATTGTCAGCTGAAGGTGAAGCACAAGCTATCCTCGCTAAAGCTGATGCAACAGCCAAAGGCATTGCCCTTGTATCAAGAACCCTTAAGGAGACC GGTGGAGCAGAGGCAGCAAGTTTGAAAGTTGCCGAACAATACATTCAGGCCTTCGGCAATATTGCTAAACAGGGGACTACAATGCTGCTTCCTTCCTCGG CTGCTAATCCGGCGAGCATGATTGCTCAAGCTCTTACCATGTACAAAAGCGTGCTTGGGGATGGTCCTTCTAACACTGCTGGCCATGAAAGCTCTTCTAC ACTTGAGCTTACAGGAGGTGGAGAACACAATGGTGAAGTTGCGAAGGAGATTCCAAGTCGGAACAAGGGTGGATCTGGTTTTTCGCTTCAGAAGCCGAGG GCAGAGTAG
AA sequence Show only first row Show all	>Lus10015597 pacid=23145916 polypeptide=Lus10015597 locus=Lus10015597.g ID=Lus10015597.BGIv1.0 annot-version=v1.0 MPKEVRILAVQLALISVMDRSSSIDRLRILLESHALVSLEILWDDDLPLPLIPWGQLLKDLLDDASCLHSHLEVGFWCDKSSAEEAEIRRKRVRATVLPS ESIAPFPPPILKEFESINLRCQVFSDSLLRLGVICHCLMTVRLMSTFKMWRSSSSRFLKQTFQFRQQAVEQLTELPKLPTLFNHTAPISTSSAPSSISHA RLSSLPLLRSPLSSPFSVVPVRHIRSSTGELGCPITKDNVSILIDGVLYVKIIDPKLASYGVENPIYAVIQLAQTTMRSELGKITLDKTFEERDTLNEKI VEAINVAASDWGLQCLRYEIRDISPPRGVRVAMEMQAEAERKKRAQVLESEGERQANINIADGRKLSAILSAEGEAQAILAKADATAKGIALVSRTLKET GGAEAASLKVAEQYIQAFGNIAKQGTTMLLPSSAANPASMIAQALTMYKSVLGDGPSNTAGHESSSTLELTGGGEHNGEVAKEIPSRNKGGSGFSLQKPR AE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10015597 [exp]	0	1
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	1.4	0.9779
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10000872 [exp]	1.4	0.9720
AT5G50740			Heavy metal transport/detoxifi...		Lus10030514 [exp]	2.6	0.9551
AT5G44500			Small nuclear ribonucleoprotei...		Lus10013108 [exp]	5.7	0.9638
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Lus10006901 [exp]	6.0	0.9508
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Lus10037932 [exp]	6.7	0.9565
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10032262 [exp]	7.3	0.9538
AT2G04400			Aldolase-type TIM barrel famil...		Lus10006354 [exp]	7.7	0.9605
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10010685 [exp]	9.5	0.9492
AT1G04340			HR-like lesion-inducing protei...		Lus10021205 [exp]	9.7	0.9467

Compare expression of checked genes

Lus10015597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.