Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032902 [exp] 197 / 2e-65 AT1G54400 89 / 4e-22 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G054900 [exp] 59 / 3e-11 AT1G54400 97 / 3e-25 HSP20-like chaperones superfamily protein (.1) Potri.013G054800 [exp] 47 / 4e-07 AT1G54400 98 / 6e-26 HSP20-like chaperones superfamily protein (.1) Potri.013G054700 [exp] 43 / 2e-05 AT1G54400 93 / 3e-24 HSP20-like chaperones superfamily protein (.1) Potri.004G191000 [exp] 38 / 0.0006 AT2G27140 81 / 2e-19 HSP20-like chaperones superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015603 pacid=23145899 polypeptide=Lus10015603 locus=Lus10015603.g ID=Lus10015603.BGIv1.0 annot-version=v1.0 ATGACGATAACAGGGGAACGGTGTCTGGACTCCGATCATAACGATCGATGTGCGCGATTTACAAAGGAGACACGTGTCCCCAACGAAATCAACACCACTG CCATTCACGCCAAGCTCTCCTCCGGCATTCTTTCTATCTTCATGCCCAAGAATGCAACGTTGTTGCTTCCACAATCTCAGGAATCCGCTGATGGCGAACA AAATCCGCCGCAGCAGGTTTCGGAGACAGAGCATGGGCAGCAGCATCAGAAACAAGACTCAAAACCAAACGTTGGAGATTCGAGCCATCAAAATGAGGAT TGTCGGATGATGAAATTGAAAGATCCGGCGCCGGTGAGGGGGGAATTTGGAATCCTAGCTGTTGTTGTTGTTGTAATTGTGGCTGTGGGTGCGGTTCTGG TGGGATATGGATTGAGAACCAGTTACTCAAATGCGTTGTGGGAAAAATAG
AA sequence Show only first row Show all	>Lus10015603 pacid=23145899 polypeptide=Lus10015603 locus=Lus10015603.g ID=Lus10015603.BGIv1.0 annot-version=v1.0 MTITGERCLDSDHNDRCARFTKETRVPNEINTTAIHAKLSSGILSIFMPKNATLLLPQSQESADGEQNPPQQVSETEHGQQHQKQDSKPNVGDSSHQNED CRMMKLKDPAPVRGEFGILAVVVVVIVAVGAVLVGYGLRTSYSNALWEK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10015603 [exp]	0	1
AT1G75260			oxidoreductases, acting on NAD...		Lus10033210 [exp]	9.3	0.9027
AT1G75260			oxidoreductases, acting on NAD...		Lus10001963 [exp]	9.9	0.8979
AT5G46530			AWPM-19-like family protein (....		Lus10011973 [exp]	10.8	0.8939
					Lus10015565 [exp]	12.0	0.8899
AT3G26880			Plant self-incompatibility pro...		Lus10038163 [exp]	13.5	0.8889
					Lus10016944 [exp]	16.0	0.8960
AT1G75260			oxidoreductases, acting on NAD...		Lus10010832 [exp]	20.4	0.8923
AT1G07400			HSP20-like chaperones superfam...		Lus10021503 [exp]	21.6	0.8827
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009445 [exp]	24.0	0.8887
AT5G46530			AWPM-19-like family protein (....		Lus10004587 [exp]	26.7	0.8873

Compare expression of checked genes

Lus10015603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.