Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14590 468 / 5e-161 EMB2739 embryo defective 2739 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036025 [exp] 784 / 0 AT4G14590 487 / 2e-162 embryo defective 2739 (.1) Lus10009705 [exp] 328 / 4e-109 AT4G14590 214 / 7e-66 embryo defective 2739 (.1) Lus10032903 [exp] 135 / 2e-36 AT4G14590 79 / 1e-16 embryo defective 2739 (.1) Lus10009701 [exp] 50 / 5e-06 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036030 [exp] 49 / 1e-05 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G277200 [exp] 639 / 0 AT4G14590 533 / 4e-180 embryo defective 2739 (.1) Potri.001G276900 [exp] 46 / 7e-05 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 42 / 0.001 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10189 [flax] [poplar] Ints3 Integrator complex subunit 3
Representative CDS sequence Show only first row Show all	>Lus10015604 pacid=23145908 polypeptide=Lus10015604 locus=Lus10015604.g ID=Lus10015604.BGIv1.0 annot-version=v1.0 ATGGAACCAGTACTGCTGAATATTGCTTCTCACGAAGCGACGAACGAGTTCGAAGCTTCGTTAAGGCAAGCTTTCAAGGAGCTTGAACCGAAACTAAGGC CGCCGTTTTCTATACCAATCCTAACTCTGCAAGAATATGCCCAACTCAATCATGCTCTTCTTTACGGGATCTTAATCGAACCACAGTTTGCCAATATTCA TATCAAGCATCTTCACGGCATCGTCTCCGACGGGTATGCTCTTTTTGTTGGTTTAGTTCTGAAAGTTGTTGAGTTGTACTCTAGGCTTGTTGATTCTGTG AAAGCACAGTTGATTTGGGTTGTCAAAGAAATGGTGGATGTTCTAGGAGTTGGTGTTGATGGCTTGTTGGTTGGTTTGTTAAGGCAAATTGTTGGTGGGG ATTACAGTGAAAGAAGCTTGTGGTTTTGTTCTGAGTTGATTAATCTGTTCTTAGGAAAATTCGATTCTTTACTTGAAGAAGAACCGTTGGTGTTGACTAG CGCATTGTATGTGTATCTTCGGTTGCTAGCTGAGCAATATAGGGTTTCAGGCAATAGGATATTTGACTTGTTGAAGCGATTAGAGATTGAGTTCTGCATC AAGATGTTGAGACAGCAGTTCCAATTAAGTATGAAGATTGGGAGGGACCTTGTTAGGTTGCTTCAGGATTTGGTTCATATCCCAGAGTTCCGGGATGTAT GGAAGGGTTTAATTCTGGATCCGACTCAATTTAGAACTGAGGGATTTTCAGATATTTCACAATTGTATGGTTGTAGGACCTCGAGTCGGTACTTTTTGCT TCGAATTAGCCCAGATATGGAGAAGCAACTGAGATTCTTATTTGTTCATGTCAAGTTTGGTCATCAGAAGCGGTATCAATCGTGGTTTTCCAAGAAGTTT ATCTTTGGGCCAGATAGAGAGACTCTTGTAGTTGACATTATTCGGTTCATATGTTGTGCACATCACCCGTCTAATGAAATTCTTGGTTCTGATATAATTT CAAGATGGGCTATTTTAGGTTGGCTTCTAAGCTCTTGTAGGAAGAGATATGTTGAAGCCAATGCAAAGCTGGCCTTATTTTATGATTGGCTTTTCTTTGA CGAAACAAGGGATAATGTGATGAATATTGAGCCTGCAATGTTATTGATGGTGTATTCCTTGCCACAGTATATTGGCATGACTCAATCACTGCTAGAATTT TTGTTGCTTCTTGTTGACAATTATGATCAGGAGCGTGTTTATATCGTTGTGAAGGGAGTTTCATCAGCTTTCAGTAGTCTCGTTCAGAAAGGTGTTGTAC GTTCTATGGATGTTCTGACATCTTGTGATGCCCTGGCACCTTTTTTGAAAGAAAGACTTGAAAAGTTACTGTTGAGAGTAAATGAGGCAGGCCCTTATCT GTTACATCCATATCGTCTTTCGAATTGTTCTGCGGTGGCCGCAGTTCCTGAATCAAGAATTATTTCTCGAGCAACATCGCCCATCTCCAGACGACCTAGT ACTCCACCTCACTTGACTGCAGGGGCATCAACCTTGGGTGGTCTTACTTCACAGGAAATAGTCATTGATGATGTTAAAAAAGGAAATGAAAGTCTCAGCC AGGAGGTCATTAAATTGTGA
AA sequence Show only first row Show all	>Lus10015604 pacid=23145908 polypeptide=Lus10015604 locus=Lus10015604.g ID=Lus10015604.BGIv1.0 annot-version=v1.0 MEPVLLNIASHEATNEFEASLRQAFKELEPKLRPPFSIPILTLQEYAQLNHALLYGILIEPQFANIHIKHLHGIVSDGYALFVGLVLKVVELYSRLVDSV KAQLIWVVKEMVDVLGVGVDGLLVGLLRQIVGGDYSERSLWFCSELINLFLGKFDSLLEEEPLVLTSALYVYLRLLAEQYRVSGNRIFDLLKRLEIEFCI KMLRQQFQLSMKIGRDLVRLLQDLVHIPEFRDVWKGLILDPTQFRTEGFSDISQLYGCRTSSRYFLLRISPDMEKQLRFLFVHVKFGHQKRYQSWFSKKF IFGPDRETLVVDIIRFICCAHHPSNEILGSDIISRWAILGWLLSSCRKRYVEANAKLALFYDWLFFDETRDNVMNIEPAMLLMVYSLPQYIGMTQSLLEF LLLLVDNYDQERVYIVVKGVSSAFSSLVQKGVVRSMDVLTSCDALAPFLKERLEKLLLRVNEAGPYLLHPYRLSNCSAVAAVPESRIISRATSPISRRPS TPPHLTAGASTLGGLTSQEIVIDDVKKGNESLSQEVIKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10015604 [exp]	0	1
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004533 [exp]	6.0	0.8259
AT1G03110		TRM82, AtTRM82	tRNA modification 82, Transduc...		Lus10014680 [exp]	8.8	0.8192
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10013540 [exp]	12.2	0.8016
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10028841 [exp]	16.0	0.7993
AT3G15970			NUP50 (Nucleoporin 50 kDa) pro...		Lus10037931 [exp]	17.9	0.7444
AT4G31930			Mitochondrial glycoprotein fam...		Lus10017126 [exp]	18.2	0.7238
AT5G06810			Mitochondrial transcription te...		Lus10039774 [exp]	18.5	0.7079
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10041963 [exp]	21.4	0.7790
AT5G61330			rRNA processing protein-relate...		Lus10012469 [exp]	21.9	0.7702
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10017690 [exp]	23.9	0.7349

Compare expression of checked genes

Lus10015604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.