Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26500 318 / 2e-106 SUFE1, EMB1374, CPSUFE, ATSUFE SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) AT1G55805 86 / 1e-19 BolA-like family protein (.1) AT1G67810 79 / 1e-16 SUFE2 sulfur E2 (.1) AT5G50210 78 / 3e-15 SUFE3, OLD5, QS SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) AT5G17560 50 / 3e-07 BolA-like family protein (.1) AT5G09830 48 / 5e-07 BolA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032905 [exp] 603 / 0 AT4G26500 380 / 4e-131 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10026101 [exp] 84 / 1e-19 AT4G26500 124 / 1e-37 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10002318 [exp] 79 / 1e-17 AT1G55805 119 / 2e-35 BolA-like family protein (.1) Lus10006468 [exp] 77 / 5e-16 AT1G67810 189 / 1e-59 sulfur E2 (.1) Lus10043314 [exp] 78 / 2e-15 AT5G50210 1020 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Lus10019464 [exp] 74 / 8e-14 AT5G50210 1016 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Lus10011408 [exp] 66 / 4e-12 AT1G67810 167 / 3e-51 sulfur E2 (.1) Lus10009527 [exp] 51 / 2e-07 AT5G17560 145 / 2e-44 BolA-like family protein (.1) Lus10020347 [exp] 50 / 3e-07 AT5G17560 158 / 2e-49 BolA-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G165400 [exp] 370 / 9e-127 AT4G26500 404 / 1e-140 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Potri.001G468300 [exp] 366 / 2e-125 AT4G26500 392 / 5e-136 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Potri.015G085300 [exp] 88 / 1e-18 AT5G50210 989 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Potri.012G036800 [exp] 81 / 1e-18 AT1G55805 130 / 6e-40 BolA-like family protein (.1) Potri.012G089500 [exp] 81 / 1e-16 AT5G50210 401 / 1e-134 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1) Potri.013G074100 [exp] 48 / 2e-06 AT5G17560 156 / 6e-49 BolA-like family protein (.1) Potri.001G309200 [exp] 45 / 4e-06 AT5G09830 132 / 4e-42 BolA-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01722 [flax] [poplar] BolA BolA-like protein CL0233 [flax] [poplar] SufE_NifU PF02657 [flax] [poplar] SufE Fe-S metabolism associated domain
Representative CDS sequence Show only first row Show all	>Lus10015605 pacid=23145895 polypeptide=Lus10015605 locus=Lus10015605.g ID=Lus10015605.BGIv1.0 annot-version=v1.0 ATGCTTGGGTTTTATGGTTCACTTATATTGTCGCCAAAACACGTTTGTCGGAGATTCTTCTCTGCTAATTGCGTCGGCTTTAGCTCCACCGCTGGGAATT TGGGAAAACCGCCGACAATGTCATCTTCCATCTCGCATTCCTTTCGCCTCCTCACCACCAAATTGCCAATCCCTCTTCCGCGAACACAATCCCTATCCAA ACCCTCAATCCCGACTTCCCATCTAATCTCAAAGTCCATCTCTTTCCAGACAATCGACACAAAGAAGCAATCCAGATCCCCTGTATCAGTCTCTGCGTCA AACTCCACCTCTCTGCAGCCCATAGAAGAGCTCCCTCCGCAGCTCCAGGAGATCATCAAGCTGTTCCAGTCGGTACAAGAACCTAAAGCCAAATACGAGC AGCTACTCTTCTACGGCAAGAACTTGAAACCGCTGGATGCCCAATTCAAGACGAAAGAGAACAAGGTTCAAGGCTGCGTTTCTCAAGTCTGGGTGAGGGC TTACCTGGATGATGATGAGAGGAGAAACGTTTTTTTCGATGCGGATTCGGATTCGGTTCTGACCAAAGGACTCGCTGCTTTGCTAGTCCAGGGCCTCTCC GGGAGGCCAGTAGAGGAGATTGTTAGGGTTTCACCTGATTTCGCTGTTCTTCTTGGGCTGAACCAGAGTTTAACCCCTTCCAGGAACAATGGGTTTTTGA ATATGTTGAAGTTGATGCAAAAGAAGGCTATTGAGTTGTATGTCCAGGCAGAAAAGGGCATTGAGTCTGCTGCCCATAGTTCCGTCCTTGATGGAAATGT CCAGACTAATGGTAATGGTCAATCTGACAATTTGATTATTAATGGGGTGGATGATGATGATGATGATGAGGGATTGAATGTGAATTCGAATGAGCCGGAA GAAGTGGGTGGTTTAGGCAGTAGAGGGTTGAGAATTAAGGAAAAATTGGAGGAAGAATTGAGACCTGTTGAATTGGAAGTGGAAGATGTTTCTTATCAGC ATGCTGGACATGCTGGTGTGGGGGGAAGTGGTGATGGGGAGACGCATTTCAACGTCAAAGTTGTTTCCAAGGATTTTGAAGGGAAGAGCTTGGTGAAGAG GCATAGGTTGATTTATGGTTTGCTGCAAGAGGAATTGCAGAGTGGTTTACATGCATTATCTATTGTGGCGAAGACTCCTGCTGAAGTTTAA
AA sequence Show only first row Show all	>Lus10015605 pacid=23145895 polypeptide=Lus10015605 locus=Lus10015605.g ID=Lus10015605.BGIv1.0 annot-version=v1.0 MLGFYGSLILSPKHVCRRFFSANCVGFSSTAGNLGKPPTMSSSISHSFRLLTTKLPIPLPRTQSLSKPSIPTSHLISKSISFQTIDTKKQSRSPVSVSAS NSTSLQPIEELPPQLQEIIKLFQSVQEPKAKYEQLLFYGKNLKPLDAQFKTKENKVQGCVSQVWVRAYLDDDERRNVFFDADSDSVLTKGLAALLVQGLS GRPVEEIVRVSPDFAVLLGLNQSLTPSRNNGFLNMLKLMQKKAIELYVQAEKGIESAAHSSVLDGNVQTNGNGQSDNLIINGVDDDDDDEGLNVNSNEPE EVGGLGSRGLRIKEKLEEELRPVELEVEDVSYQHAGHAGVGGSGDGETHFNVKVVSKDFEGKSLVKRHRLIYGLLQEELQSGLHALSIVAKTPAEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10015605 [exp]	0	1
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030601 [exp]	2.2	0.9111
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10028707 [exp]	3.0	0.8622
AT5G40510			Sucrase/ferredoxin-like family...		Lus10022274 [exp]	3.3	0.8556
AT1G71100		RSW10	RADIAL SWELLING 10, Ribose 5-p...		Lus10042951 [exp]	3.7	0.8808
AT1G31830			Amino acid permease family pro...		Lus10012153 [exp]	7.3	0.8807
AT2G31670			Stress responsive alpha-beta b...		Lus10034659 [exp]	8.1	0.8676
AT2G42310			unknown protein		Lus10042351 [exp]	10.8	0.8384
AT3G55440		CYTOTPI, ATCTIM...	CYTOSOLIC ISOFORM TRIOSE PHOSP...		Lus10016538 [exp]	11.8	0.8643
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10004089 [exp]	17.0	0.8611
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10013537 [exp]	17.8	0.8787

Compare expression of checked genes

Lus10015605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.