Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26490 185 / 1e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G56050 177 / 2e-54 unknown protein AT1G13050 118 / 1e-32 unknown protein AT3G26350 116 / 3e-30 unknown protein AT5G56070 57 / 2e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032906 [exp] 442 / 9e-159 AT4G26490 218 / 1e-70 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006464 [exp] 122 / 8e-32 AT3G26350 208 / 2e-63 unknown protein Lus10011406 [exp] 120 / 2e-30 AT3G26350 209 / 5e-60 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G165500 [exp] 258 / 1e-86 AT4G26490 275 / 3e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G468400 [exp] 250 / 2e-83 AT4G26490 265 / 5e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.010G049000 [exp] 127 / 3e-34 AT3G26350 189 / 1e-56 unknown protein Potri.009G019600 [exp] 45 / 1e-05 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G039400 [exp] 40 / 0.001 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10015606 pacid=23145917 polypeptide=Lus10015606 locus=Lus10015606.g ID=Lus10015606.BGIv1.0 annot-version=v1.0 ATGATGCATCCTCTCCCACCCCCCCCACCAGCATCTCAGCTGGAATCTATACCAGAAAAGGAAGCAACTTCAGCAGTCAATCTCAACCAGATTGTCATTT CCAAGCATGTTGTAATTCCAAAGAATGTCAGAAAACACCAAAAACCAACCCCACCAGTAGCAGCAGAGGTGGTTTCATTTTCTGACACCAAGTTGCTAAC AGGAACTCAGCCAATACTCCATCCTCTGCGTCCTCGGAGAACCAACCCACTCGTCTGGTTCGGAGCCATCCTATGCCTCATCTTCAGCCTTCTTCTAATC TTCTTGGCAATCACAACTTTAATCGCCTACCTTGTTGTCAGACCCAAACACCCGGTTTTCGATGTCCCGCACGCCCGCCTCAATGGGATATACTTTGATT CACCAGAGTACTTCAATGGAGATATAAGCTTGATTGTTAACTTCACCAACCAAAATAAGAAAATGGATGTCACATTCGAGTACGCTGACATCAAAGTCTA CTTTGGTAACAAACTCATAGGGGCTCAAGCTCTTAACCCTTTCACTCAGAGACCGAGAGCGATATCGTGGCAAACAGTTCGTGTCATATCGAGTCTGGTC TATTTGCCACAGAGTTCTGCTGTGGAACTCCAAAAGCAAGTGCTGAGTAACAAGGTCACTTACAACATACGAGCTACGTTCAAGCTGAAAGCGACCCTTG GCCTCTTCCACTATACTTACTGGCTTCATGGTAAGTGTGATACCGTCATCAGTAGCCCTCCAGCGGGCGTTCTAGTTTCTCGGAGCTGCAACACATATAG ATGA
AA sequence Show only first row Show all	>Lus10015606 pacid=23145917 polypeptide=Lus10015606 locus=Lus10015606.g ID=Lus10015606.BGIv1.0 annot-version=v1.0 MMHPLPPPPPASQLESIPEKEATSAVNLNQIVISKHVVIPKNVRKHQKPTPPVAAEVVSFSDTKLLTGTQPILHPLRPRRTNPLVWFGAILCLIFSLLLI FLAITTLIAYLVVRPKHPVFDVPHARLNGIYFDSPEYFNGDISLIVNFTNQNKKMDVTFEYADIKVYFGNKLIGAQALNPFTQRPRAISWQTVRVISSLV YLPQSSAVELQKQVLSNKVTYNIRATFKLKATLGLFHYTYWLHGKCDTVISSPPAGVLVSRSCNTYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26490			Late embryogenesis abundant (L...		Lus10015606 [exp]	0	1
AT4G26490			Late embryogenesis abundant (L...		Lus10032906 [exp]	1.7	0.9487
AT1G09812			unknown protein		Lus10035787 [exp]	4.2	0.9121
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Lus10026994 [exp]	6.3	0.8547
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10012080 [exp]	6.6	0.8978
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10041752 [exp]	7.1	0.8949
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026224 [exp]	9.8	0.8981
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10016496 [exp]	11.1	0.8367
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10026020 [exp]	12.0	0.8782
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10004581 [exp]	15.2	0.8857
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10043304 [exp]	16.4	0.8895

Compare expression of checked genes

Lus10015606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.