Plant FIBer expression Database

Lus10015607 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57000 69 / 7e-15 unknown protein
AT1G72690 64 / 3e-14 unknown protein
AT1G17490 50 / 6e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006884
[exp]
147 / 2e-45 AT5G57000 85 / 2e-21 unknown protein
Lus10008389
[exp]
65 / 2e-14 AT1G72690 76 / 2e-19 unknown protein
Lus10006016
[exp]
61 / 1e-11 AT3G13898 76 / 4e-17 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G119600
[exp]
70 / 2e-16 AT1G72690 91 / 2e-25 unknown protein
Potri.006G148000
[exp]
71 / 5e-16 AT5G57000 83 / 2e-20 unknown protein
Potri.004G095300
[exp]
61 / 1e-12 AT1G72690 57 / 3e-12 unknown protein
PFAM info
Representative CDS sequence
>Lus10015607 pacid=23147235 polypeptide=Lus10015607 locus=Lus10015607.g ID=Lus10015607.BGIv1.0 annot-version=v1.0
ATGAACAAATTTGAAGAAGAGAAGCATGGGAAGCATCATCACAACTTCATTGAGAAGGCCAAGGAGAAGATTGAGAAAGTGATCCACTCCCCACGCCATC
ATCATCATGAAAAGGAAACACATGGAACTAGCAACCGCATCATCGACGAGAACACCTCGATCGACGAAGTGAGAGGGCCGAATATGTTTCAGAGAGCTAA
AGAGGAGATCGAGGCACTCGTCGAGACGATTCATCATCATCCCGACAAGGAGAAGGAGAAGGAGCAGGAGAAGCATCGTCATGACAAGGAAACACATGGA
ACGAGCGAGGATATAGACGAGAACACCTCGATCGATGAAGTTAGAGGGCCAAATGTGTTTCAGAGGGCGAAGGAAGAAATCGAGGCACTGGTCGAAACGA
TTCATCATCATCCGAAGAAGGAGGACGACGAGAAGAGTAGTAAGCATCATAAGTCTCCATCTACCTAG
AA sequence
>Lus10015607 pacid=23147235 polypeptide=Lus10015607 locus=Lus10015607.g ID=Lus10015607.BGIv1.0 annot-version=v1.0
MNKFEEEKHGKHHHNFIEKAKEKIEKVIHSPRHHHHEKETHGTSNRIIDENTSIDEVRGPNMFQRAKEEIEALVETIHHHPDKEKEKEQEKHRHDKETHG
TSEDIDENTSIDEVRGPNVFQRAKEEIEALVETIHHHPKKEDDEKSSKHHKSPST

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G72690 unknown protein Lus10015607
[exp]
0 1
AT3G28970 AAR3 antiauxin-resistant 3, Domain ... Lus10030685
[exp]
1.7 0.9435
AT1G11905 B-cell receptor-associated pro... Lus10000048
[exp]
7.7 0.9340
AT3G25940 TFIIB zinc-binding protein (.1... Lus10015458
[exp]
11.2 0.9123
AT5G05330 HMG-box (high mobility group) ... Lus10000418
[exp]
13.2 0.9245
AT4G08240 unknown protein Lus10009881
[exp]
13.4 0.9154
AT4G17960 unknown protein Lus10000314
[exp]
13.8 0.9276
AT5G14290 Mitochondrial ribosomal protei... Lus10041583
[exp]
14.1 0.9111
AT4G38980 unknown protein Lus10035474
[exp]
14.4 0.9014
AT5G03030 Chaperone DnaJ-domain superfam... Lus10023494
[exp]
14.5 0.9176
AT4G22310 Uncharacterised protein family... Lus10023745
[exp]
14.7 0.9283

Lus10015607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.