Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13882 135 / 6e-41 Ribosomal protein L34 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037626 [exp] 268 / 3e-93 AT3G13882 157 / 2e-50 Ribosomal protein L34 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G041100 [exp] 132 / 6e-40 AT3G13882 154 / 6e-49 Ribosomal protein L34 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00468 [flax] [poplar] Ribosomal_L34 Ribosomal protein L34
Representative CDS sequence Show only first row Show all	>Lus10015609 pacid=23147240 polypeptide=Lus10015609 locus=Lus10015609.g ID=Lus10015609.BGIv1.0 annot-version=v1.0 ATGTCGTCGAAAACGCTAGTCCAGAGCGGAGCCTCTCTGATGAACCGGTTGCTCTTCCGTTCAAATCCGATTGCCCACCAGAAGATCCCTATCTTGCAGA ATCATTCCCAGGGAATCGCTCCTCCGCTGCTATTCCCTTCCCTCCACAAGTTCCAGGCTCCTCCCGGCGATTCGTCTAGAATAGACGACTTCAATTCGAT CCAGAGAATCGCCAATGAAGGGTTCCTGAATCCCTGCGGCCTCCCTTCTCGTGACTTCTTCTTGCCTGAAGCTGATTCGGCTGATGAAGCGATGATCTTG CTTCCGAAAAGGACGTTCCAACCTAGCACCATCAAGCGTAAGAGAACCCATGGATTCTTTGCACGGTATATTCTCCATCTCTGCCTTTCTCTAAGAAACC AGCAATTGCTTGCAGCATTCACTAACGTTCTTCTTCTTCATTTTGCTGGATCTTTGTTCATCAACAGCAAGGCAACCAAAGGTGGCCGGAAAGTCATTGC TCGACGAGTGGCGAAAGGCCGGTTCAGAATTACAGCCTAA
AA sequence Show only first row Show all	>Lus10015609 pacid=23147240 polypeptide=Lus10015609 locus=Lus10015609.g ID=Lus10015609.BGIv1.0 annot-version=v1.0 MSSKTLVQSGASLMNRLLFRSNPIAHQKIPILQNHSQGIAPPLLFPSLHKFQAPPGDSSRIDDFNSIQRIANEGFLNPCGLPSRDFFLPEADSADEAMIL LPKRTFQPSTIKRKRTHGFFARYILHLCLSLRNQQLLAAFTNVLLLHFAGSLFINSKATKGGRKVIARRVAKGRFRITA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13882			Ribosomal protein L34 (.1.2)		Lus10015609 [exp]	0	1
AT3G13882			Ribosomal protein L34 (.1.2)		Lus10037626 [exp]	1.0	0.9003
AT3G53430			Ribosomal protein L11 family p...		Lus10015086 [exp]	2.8	0.8881
AT3G03920			H/ACA ribonucleoprotein comple...		Lus10020289 [exp]	3.2	0.8977
AT3G03590			SWIB/MDM2 domain superfamily p...		Lus10005667 [exp]	5.7	0.8967
AT4G15000			Ribosomal L27e protein family ...		Lus10039017 [exp]	8.5	0.8467
AT1G09590			Translation protein SH3-like f...		Lus10021079 [exp]	11.8	0.8460
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Lus10036911 [exp]	13.1	0.8438
AT5G60030			unknown protein		Lus10023334 [exp]	14.1	0.8308
AT1G73940			unknown protein		Lus10017355 [exp]	15.4	0.8315
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10002172 [exp]	16.2	0.8451

Compare expression of checked genes

Lus10015609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.