Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72880 451 / 7e-159 Survival protein SurE-like phosphatase/nucleotidase (.1.2) AT4G14930 183 / 5e-55 Survival protein SurE-like phosphatase/nucleotidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037627 [exp] 633 / 0 AT1G72880 508 / 0.0 Survival protein SurE-like phosphatase/nucleotidase (.1.2) Lus10008390 [exp] 536 / 0 AT1G72880 526 / 0.0 Survival protein SurE-like phosphatase/nucleotidase (.1.2) Lus10004909 [exp] 195 / 1e-59 AT4G14930 387 / 1e-135 Survival protein SurE-like phosphatase/nucleotidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G196800 [exp] 467 / 6e-165 AT1G72880 473 / 3e-167 Survival protein SurE-like phosphatase/nucleotidase (.1.2) Potri.003G041000 [exp] 462 / 2e-163 AT1G72880 480 / 4e-170 Survival protein SurE-like phosphatase/nucleotidase (.1.2) Potri.010G088000 [exp] 199 / 3e-61 AT4G14930 365 / 4e-127 Survival protein SurE-like phosphatase/nucleotidase (.1) Potri.010G088100 [exp] 192 / 1e-58 AT4G14930 355 / 5e-123 Survival protein SurE-like phosphatase/nucleotidase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01975 [flax] [poplar] SurE Survival protein SurE
Representative CDS sequence Show only first row Show all	>Lus10015610 pacid=23147257 polypeptide=Lus10015610 locus=Lus10015610.g ID=Lus10015610.BGIv1.0 annot-version=v1.0 ATGGCGTCCGCAAAAAAGGGTTTACCGCCGGGCCTCGTTTCGAATCTGCAAGAAGTTCTGAGCATCAGAAAGGGTCCTGGAGATGAGCAATCAAACGATC ATGGACCTTCCACTTCAGAGGAGGAAGACGACAAAAGACCGGTTCTTCTGGTCATCAATGGTAATGGGATTGATTCCCCTGGCCTACTCCTTCTCGTCGA AGCTTTGGTTCGTGAAGGACGCTATAATGTCCATGTCTGCGCTCCCCAATTGGACAAATCGGTTTCTGCTCATTCTGTTACTCAAGGGGAAACCATAGCT GCAACTTCTGCTCAAATTGATGGAGCTACAGCATTCGAAATCTCAGGAACACCGGTGGATTGTGTGTCGTTAGCAATGTCTGGAGCACTCTTTTCTTGGT CAAAGCCTCTCCTGGTCATTAGTGGGATTGACAAGGGGTCGAGCTGCGGTCATCATATGTTTTACTCGGGTGTTGTTGCTGGAGCTAGAGAGGCATTACT TAATGGTGTCCCTTCTCTATCAATCTCTCTTAACTGGAAGAAGGATGAAAGCAAGGAAAGCGATTTCAAGGATGCGGTCGCTGTTTGTTTGCCGTTGATA AATGCTGCGATAAGAGATATCGAGAAGGGGGCTTTCCCCAGCAGCTGCTCTCTGAACATACAAATCCCTACTTCACCGTCCGCAAACAAAGGTTTCAAAC TTACTAAGCAAAGTATGTGGCGGTCTACCCTTAGCTGGAATGCTGTTTCCGCAAACCGGCATCCTGCTCCTGGATACATGTCCAATCAACAAAGTCTCGG CCTACAGCTTGCACAGCTTGGTCGAGATGCCTCTGCTGCCGGAGCTGCACGTCGCGTAACCAAACAAGGGACGAACGTGGAGATCGAGTCGGTTGGGGCA TCTGGAAAAACCGACTCGAACAAAGTGAAAAAGTACTTCAGACTAGAGTTTATGGAGAAGGAGCAAGAAGACTCCGACGAGGACCTCGATTTCAGAGCGC TTGCAAATGGATTTGTTTCAGTAACACCATTTTCGGTCTCGCCACACGTCGAATCATCCGACACGCTGACATCAGCCTCAGAATGGATCTCTTCTGCACT TCAAGAGAGCCAATAA
AA sequence Show only first row Show all	>Lus10015610 pacid=23147257 polypeptide=Lus10015610 locus=Lus10015610.g ID=Lus10015610.BGIv1.0 annot-version=v1.0 MASAKKGLPPGLVSNLQEVLSIRKGPGDEQSNDHGPSTSEEEDDKRPVLLVINGNGIDSPGLLLLVEALVREGRYNVHVCAPQLDKSVSAHSVTQGETIA ATSAQIDGATAFEISGTPVDCVSLAMSGALFSWSKPLLVISGIDKGSSCGHHMFYSGVVAGAREALLNGVPSLSISLNWKKDESKESDFKDAVAVCLPLI NAAIRDIEKGAFPSSCSLNIQIPTSPSANKGFKLTKQSMWRSTLSWNAVSANRHPAPGYMSNQQSLGLQLAQLGRDASAAGAARRVTKQGTNVEIESVGA SGKTDSNKVKKYFRLEFMEKEQEDSDEDLDFRALANGFVSVTPFSVSPHVESSDTLTSASEWISSALQESQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72880			Survival protein SurE-like pho...		Lus10015610 [exp]	0	1
AT1G72880			Survival protein SurE-like pho...		Lus10037627 [exp]	1.0	0.8208
AT5G35930			AMP-dependent synthetase and l...		Lus10020348 [exp]	5.5	0.8130
AT1G19835			Plant protein of unknown funct...		Lus10034510 [exp]	12.7	0.7162
AT3G16950		PTLPD1, LPD1	lipoamide dehydrogenase 1 (.1....		Lus10037741 [exp]	13.9	0.7852
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10007951 [exp]	14.5	0.7488
AT5G04420			Galactose oxidase/kelch repeat...		Lus10017457 [exp]	19.9	0.7732
AT4G35320			unknown protein		Lus10013844 [exp]	20.7	0.7399
AT2G23140			RING/U-box superfamily protein...		Lus10024899 [exp]	21.0	0.7518
AT1G77580			Plant protein of unknown funct...		Lus10025674 [exp]	23.0	0.7127
AT4G39050			Kinesin motor family protein (...		Lus10028790 [exp]	24.5	0.7475

Compare expression of checked genes

Lus10015610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.