Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17650 494 / 1e-171 GR2, GLYR2 glyoxylate reductase 2 (.1) AT2G19480 370 / 4e-123 NFA2, NFA02, NAP1;2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) AT5G56950 345 / 2e-113 NFA3, NFA03, NAP1;3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1) AT4G26110 344 / 3e-113 NAP1;1, ATNAP1;1 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) AT3G25530 331 / 4e-109 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT3G13782 241 / 5e-74 NFA4, NFA04, NAP1;4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, nucleosome assembly protein1;4 (.1) AT4G29120 145 / 2e-38 6-phosphogluconate dehydrogenase family protein (.1) AT4G20930 131 / 2e-33 6-phosphogluconate dehydrogenase family protein (.1) AT1G71170 108 / 5e-26 6-phosphogluconate dehydrogenase family protein (.1) AT1G71180 97 / 6e-22 6-phosphogluconate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037629 [exp] 630 / 0 AT1G17650 486 / 9e-174 glyoxylate reductase 2 (.1) Lus10037630 [exp] 530 / 0 AT2G19480 386 / 1e-133 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10011957 [exp] 343 / 6e-113 AT2G19480 449 / 2e-158 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10011956 [exp] 338 / 7e-111 AT2G19480 422 / 8e-148 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10027615 [exp] 302 / 2e-97 AT2G19480 385 / 3e-134 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10012301 [exp] 292 / 3e-94 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2) Lus10016077 [exp] 275 / 5e-83 AT3G57220 611 / 0.0 Glycosyl transferase family 4 protein (.1) Lus10011959 [exp] 260 / 1e-79 AT2G19480 319 / 5e-106 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10001235 [exp] 216 / 6e-65 AT4G26110 250 / 2e-81 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G040800 [exp] 531 / 0 AT1G17650 508 / 0.0 glyoxylate reductase 2 (.1) Potri.006G148600 [exp] 360 / 4e-119 AT2G19480 447 / 1e-157 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.018G067800 [exp] 360 / 6e-119 AT2G19480 462 / 4e-163 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.014G197900 [exp] 323 / 3e-106 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.003G036200 [exp] 278 / 4e-86 AT2G19480 285 / 3e-92 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036500 [exp] 277 / 2e-85 AT2G19480 280 / 5e-90 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040250 [exp] 282 / 4e-84 AT2G19480 280 / 9e-87 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G021400 [exp] 263 / 1e-81 AT2G19480 286 / 2e-94 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040700 [exp] 266 / 3e-81 AT2G19480 287 / 7e-93 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G038450 [exp] 235 / 4e-74 AT1G17650 217 / 8e-71 glyoxylate reductase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00956 [flax] [poplar] NAP Nucleosome assembly protein (NAP) CL0063 [flax] [poplar] NADP_Rossmann PF03446 [flax] [poplar] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10015612 pacid=23147203 polypeptide=Lus10015612 locus=Lus10015612.g ID=Lus10015612.BGIv1.0 annot-version=v1.0 ATGCGGGTGAAGACTGCTATGGCCATCTCCAGTAGCTGCCTTTTCTCCCCTCAGAGACCCATTTCTGCATTCGCACCTAAGCGCCTTCGTTCTTCTTCCA CTGCTTTCTCTGCTCAAGCTTCCATCAAAGATGGTTCATCAACTAGTGTTGGATTTCTGGGTCTTGGAATCATGGGCGCGCCCATGGCGCAAAATCTCTT GAAAGCCGGATGTGATGTGACTGTCTGGAACAGAACTGAGAGCAAATGTGACCCTCTGATCAGCTTAGGTGCAAAATATAAACCTTCTCCAGAGGAAGTT GCTGCTGCTTGTGATGTTACATTCGCGATGCTTTCGGATCCTCAAAGTGCGATGGAGGTAGCCTGCGGAAAGCATGGAGCAGCAAGTGGTATGGCTCCGG GAAAAGGCTATGTCGACGTTTCAACTGTTGATGGAGGGACTTCTAAGTTGATCAATGAACGCATCAAGTCTACCGGAGCATCATTCCTGGAAGCTCCTGT TTCCGGCTCTAAAAAGCCTGCAGAAGATGGCCAACTGATATTCCTCACTGCAGGTGACAAGCCTCTCTACGACTTGGCCTCTCCTTTCCTCGACATCATG GGGAAGTCTAGATTCTACCTTGGTGATGTTGGTAATGGAGCTGCTATGAAGCTTGTAGTCAATATGATGATGGGAAGTATGATGGCGACTTTGGCAGAAG GGCTGATGCTGAGCGAAAAAGTAGGGCTGGACCCTAATGTTCTAGTAGAAGTACTCTCACAGGGAGCCATAAGTGCTCCAATGTACTCCATGAAAGGACC TTCCATGATAAAATCTGTTTACCCTACAGCTTTCCCTCTCAAACATCAACAGAAGGACATGAGGCTTGCTCTTGGACTAGCGGAATCAGTTTCGCAGGCA ACACCAGTTGCAGCAGCTGCAAATGAGATGTACAAAGTTGCTAAAAGCCAGGGCCTTAGTGATGCTGATTTCTCTGCTGTCATTGAATCACTGAAAACCA AAGTTTTAACTCTCAGTGCGGAGGATCGAGCCGACCTTGTTAATGCACTTAAGAATAAGCTTCAGAACTTAGCTGGGCAGCACTCAAACATCATTGAAGA CCTGCCCCCAAAAGTCAGGAAGCGTGTAGAGTATCTGAAAGAGGTTCAGAGCCAACATGATGAGCTGGAGGCAAAGTTCTTTGAGGAAAGAAGGGCACTA GAGGCCAAGTATCAGACGCTTTATGAACCACTCTATACACAGAGATATGAGATTGTAAATGGCAGTAAAGAAGTTGACGGGGTGTCATCCGAAGAATTGG AGGACCAAGAAGCAGACAAACGTGCAGAAAAGGGAGTGCGTGACTTCTGGCTCATAGCTATGAAAAACAATGAAGTGTTAGCTGAGGAGATAACTGAACG TGACGAGCCTGCTCTCAAGTTTCTGAAAGATATCAAAAGCATTAGAATTCTTGAGCCTGTGGGTTTTAAGCTCGAGTTTTACTTCGATCCAAATCCCTAT TTCAAGAATTCGGTACTGACGAAAACTTATCACGTGATCGAGGACGACGATGATCCTGTTCTGGAGAGAGCACTGGGGACGGAAATTGACTGGTGTCCTG GAAAATGCTTGACCAAGAAGGTCCTGAAGAAGAAACCAAGAAAGGGATCCAAGAACACCAAACCCATCACGAAAATCGAGGACTGTCCGAGTTTCTTCAC ATTCTTCAACGTACCCCAGATGCCTGAGGACGAAGACGACCTTGACGAAGATGCTGTTGAGGATCTTCAAGATCGAATGGAGCAGGACTACAATATTGGC ACGACGATTCGGAACAAGATTATAGGTCATGCTGTGGCCTGGTACACTGGGGAGGCTATCGAGGAAGGTGATGTCTATGGCCACCATCTGGATGATGACG ACGATGATGAGAACGACAGTGAAGAGGATGCTACCGACAATGACAACGAAGATGAAGGCAAAAGAAGCCAGCAAAACCTGTAG
AA sequence Show only first row Show all	>Lus10015612 pacid=23147203 polypeptide=Lus10015612 locus=Lus10015612.g ID=Lus10015612.BGIv1.0 annot-version=v1.0 MRVKTAMAISSSCLFSPQRPISAFAPKRLRSSSTAFSAQASIKDGSSTSVGFLGLGIMGAPMAQNLLKAGCDVTVWNRTESKCDPLISLGAKYKPSPEEV AAACDVTFAMLSDPQSAMEVACGKHGAASGMAPGKGYVDVSTVDGGTSKLINERIKSTGASFLEAPVSGSKKPAEDGQLIFLTAGDKPLYDLASPFLDIM GKSRFYLGDVGNGAAMKLVVNMMMGSMMATLAEGLMLSEKVGLDPNVLVEVLSQGAISAPMYSMKGPSMIKSVYPTAFPLKHQQKDMRLALGLAESVSQA TPVAAAANEMYKVAKSQGLSDADFSAVIESLKTKVLTLSAEDRADLVNALKNKLQNLAGQHSNIIEDLPPKVRKRVEYLKEVQSQHDELEAKFFEERRAL EAKYQTLYEPLYTQRYEIVNGSKEVDGVSSEELEDQEADKRAEKGVRDFWLIAMKNNEVLAEEITERDEPALKFLKDIKSIRILEPVGFKLEFYFDPNPY FKNSVLTKTYHVIEDDDDPVLERALGTEIDWCPGKCLTKKVLKKKPRKGSKNTKPITKIEDCPSFFTFFNVPQMPEDEDDLDEDAVEDLQDRMEQDYNIG TTIRNKIIGHAVAWYTGEAIEEGDVYGHHLDDDDDDENDSEEDATDNDNEDEGKRSQQNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10015612 [exp]	0	1
AT5G66530			Galactose mutarotase-like supe...		Lus10041758 [exp]	1.0	0.8404
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10001196 [exp]	4.2	0.7638
AT1G30130			unknown protein		Lus10028119 [exp]	4.5	0.7489
					Lus10032893 [exp]	5.7	0.7760
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10003654 [exp]	6.5	0.7354
AT3G54360			zinc ion binding (.1)		Lus10024116 [exp]	7.2	0.7371
AT5G06440			unknown protein		Lus10013601 [exp]	10.4	0.7178
AT2G02410			unknown protein		Lus10042400 [exp]	11.6	0.7846
					Lus10001901 [exp]	17.3	0.7457
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	17.7	0.7538

Compare expression of checked genes

Lus10015612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.