Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13790 639 / 0 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT1G55120 623 / 0 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT3G13784 595 / 0 ATCWINV5 cell wall invertase 5 (.1) AT3G52600 534 / 0 ATCWINV2 cell wall invertase 2 (.1.2) AT2G36190 532 / 0 ATCWINV4 cell wall invertase 4 (.1) AT5G11920 478 / 1e-163 ATCWINV6 6-&1-fructan exohydrolase (.1.2) AT1G62660 428 / 9e-143 Glycosyl hydrolases family 32 protein (.1) AT1G12240 422 / 2e-140 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037631 [exp] 1146 / 0 AT3G13790 633 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015614 [exp] 803 / 0 AT3G13790 658 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037632 [exp] 777 / 0 AT3G13790 648 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10008392 [exp] 656 / 0 AT3G13790 756 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037633 [exp] 625 / 0 AT3G13790 704 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10017015 [exp] 536 / 0 AT2G36190 683 / 0.0 cell wall invertase 4 (.1) Lus10001529 [exp] 532 / 0 AT3G13790 598 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10014219 [exp] 521 / 7e-180 AT2G36190 711 / 0.0 cell wall invertase 4 (.1) Lus10014217 [exp] 516 / 5e-178 AT2G36190 688 / 0.0 cell wall invertase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G227400 [exp] 587 / 0 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.006G227500 [exp] 569 / 0 AT3G13790 660 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.016G077400 [exp] 544 / 0 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2) Potri.006G210600 [exp] 543 / 0 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077500 [exp] 538 / 0 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2) Potri.003G112600 [exp] 434 / 7e-145 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.003G126300 [exp] 427 / 2e-142 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.015G127100 [exp] 410 / 6e-136 AT1G62660 712 / 0.0 Glycosyl hydrolases family 32 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF08244 [flax] [poplar] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal CL0143 [flax] [poplar] B_Fructosidase PF00251 [flax] [poplar] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10015613 pacid=23147182 polypeptide=Lus10015613 locus=Lus10015613.g ID=Lus10015613.BGIv1.0 annot-version=v1.0 ATGGCGCTAATCGACACTTCCTTATCTCAAATTCTCGTGTCGTTCATGTTCTTCGCTCTGCTCTCCATTAATGTTAGTAATGCTACACATGATGATGAGC CTCGAAAGAAGTATGATCATCGTCAACCTTATAGAACTGCCTTCCACTTCCAGCCTCCTAGAAATTGGATCAATGGGCCGATGGTGCACGAAGGCATATA CCATCTATTCTACCAATACAACCCCAATGGATCAGTATGGGACACCCACATCTCATGGGGACATGCAACATCCAAAGACCTAATCAACTGGTCAATCCAA CCAAATGCAATTTCTCCATCTGATCCTTCAACAGACATCAATGGTGCTTGGTCTGGCTCAGCCACAATACTCCCTAGTTCCAAACCGGTCATCTTCTACA CCGGAATCAACTCGAACAACCAACAAGTCCAAAACCTAGCATCCCCCAAGGACCCTTCCGACCCGTACCTCGTCGAGTGGACCAAGTCGTTTCGAAACCC TACTTTGTACGCTACGTCCCGCAACCATATCAACGGTAGCTCCTTCAGGGACCCTTCAACCGCATGGTTCGGGCCTGACCACAGGTGGAGACTTGTCGTC GGAAGCCAGGTTGGCACACGAGGTGTAGCAGTACTATACAAGAGTGTGGACTTTGTGCATTGGGTCAAGTCCAAGAAGCCGATTCATTCGGCTCGAGGGA ACGGAATGTGGGAGTGTCCCGATGTCTATCCTGTCTCTCTAGGTGGAAAGGGCAGCATAGATACGTCAAAAAGTATCGAAGGAAGCAACCTTAAATTCGT GTTGAAAGTGAGCTTGTTTGACATAAGACGCGACTACTACATGATTGGGAACTACAGTTTTGACCAGGATGTGTTCAAGCCGGACAACGGGTCAATCCGA AACGGGTTTTCAGGTCTAAGATACGATTACGGGAAGTTCTATGCTTCGAAATCGTTCTACGATGAGACGAAGAACCGCCGGGTTTTGTGGGGTTGGGTCA ATGAGTCCTCAAGAGTTGAGGATGATGTCAAGAAGGGTTGGGCTGGTATTATGGCAATTCCAAGAAGGTTATGGTTGGATCCATCAGGAAAACAACTTCA CATCCAACCTGTTGAAGAGACCAAAAAGCTTCGAGTCAAACCAGTTCGTTTTCCTAAGCAAATGCTACACGGATCGTCACTGGTTCGAGTCCCTAATGTA ACGGCATCCCAAGCAGATGTAGAGATCACATTCGAGGGGCTCGATTTGAGCAAGGCAGAAGTGATGGATCCAAGCTGGATAAGCAAACCACAAGTGGTAT GCACTGAGAAAGGAACATCAGTTAAAGGAAGCTTAGGGCCATTTGGGTTGAAGGTTTTGGCTTCAAAGGGTCTCAAAGAGTTCACCTCAGTGTTCTTCAG GGTCTTCAAGAACCCTCAAAATGGCAAGTTCATGGTGCTCATGTGCTCCGATCAAGCCAAGTCTTCTTTGCGTAAAGACATTGACAAGGCATCGTTTGGT ACCTTTGTGAATGTGAATCCAATTCATCACAATTTGCCTCTAAGAGTACTGATTGATCACTCGATAGTGGAGAGTTTCGGCGGGAATGGGAAGAGCTGCA TAACTGCAAGAGTTTACCCGAAGCTGGCTGTAAACGAAGCTGCTCGTCTATACGCTTTCAACTATGGAACTCAGAGTGTGAGGATCTCAAGGCTTAGGGC ATGGAGCATGAGGAATGCCAGAATCCACCCTGGGAAATGGCACTGGCTTGGCAATAATGACAATTAG
AA sequence Show only first row Show all	>Lus10015613 pacid=23147182 polypeptide=Lus10015613 locus=Lus10015613.g ID=Lus10015613.BGIv1.0 annot-version=v1.0 MALIDTSLSQILVSFMFFALLSINVSNATHDDEPRKKYDHRQPYRTAFHFQPPRNWINGPMVHEGIYHLFYQYNPNGSVWDTHISWGHATSKDLINWSIQ PNAISPSDPSTDINGAWSGSATILPSSKPVIFYTGINSNNQQVQNLASPKDPSDPYLVEWTKSFRNPTLYATSRNHINGSSFRDPSTAWFGPDHRWRLVV GSQVGTRGVAVLYKSVDFVHWVKSKKPIHSARGNGMWECPDVYPVSLGGKGSIDTSKSIEGSNLKFVLKVSLFDIRRDYYMIGNYSFDQDVFKPDNGSIR NGFSGLRYDYGKFYASKSFYDETKNRRVLWGWVNESSRVEDDVKKGWAGIMAIPRRLWLDPSGKQLHIQPVEETKKLRVKPVRFPKQMLHGSSLVRVPNV TASQADVEITFEGLDLSKAEVMDPSWISKPQVVCTEKGTSVKGSLGPFGLKVLASKGLKEFTSVFFRVFKNPQNGKFMVLMCSDQAKSSLRKDIDKASFG TFVNVNPIHHNLPLRVLIDHSIVESFGGNGKSCITARVYPKLAVNEAARLYAFNYGTQSVRISRLRAWSMRNARIHPGKWHWLGNNDN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015613 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002393 [exp]	2.2	0.8626
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10009911 [exp]	6.3	0.8323
AT5G28210			mRNA capping enzyme family pro...		Lus10040496 [exp]	12.7	0.7965
AT1G78410			VQ motif-containing protein (....		Lus10038502 [exp]	14.8	0.8165
AT2G04740			ankyrin repeat family protein ...		Lus10006409 [exp]	15.5	0.6945
					Lus10033730 [exp]	16.4	0.7687
AT3G21460			Glutaredoxin family protein (....		Lus10012815 [exp]	16.6	0.8075
					Lus10009632 [exp]	21.9	0.7588
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10001235 [exp]	22.8	0.7288
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10032373 [exp]	23.5	0.8095

Compare expression of checked genes

Lus10015613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.