Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72990 848 / 0 BGAL17 beta-galactosidase 17 (.1.2) AT4G36360 153 / 3e-38 BGAL3 beta-galactosidase 3 (.1.2) AT3G13750 146 / 6e-36 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT3G52840 144 / 2e-35 BGAL2 beta-galactosidase 2 (.1) AT1G45130 142 / 7e-35 BGAL5 beta-galactosidase 5 (.1) AT4G26140 141 / 7e-35 BGAL12 beta-galactosidase 12 (.1.2) AT2G28470 142 / 9e-35 BGAL8 beta-galactosidase 8 (.1.2) AT5G56870 137 / 3e-33 BGAL4 beta-galactosidase 4 (.1) AT2G32810 137 / 5e-33 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT1G31740 134 / 3e-32 BGAL15 beta-galactosidase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037634 [exp] 1207 / 0 AT1G72990 909 / 0.0 beta-galactosidase 17 (.1.2) Lus10015625 [exp] 154 / 2e-38 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 151 / 1e-37 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000803 [exp] 149 / 4e-37 AT1G45130 1050 / 0.0 beta-galactosidase 5 (.1) Lus10024292 [exp] 148 / 1e-36 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1) Lus10000701 [exp] 145 / 1e-35 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10006009 [exp] 142 / 7e-35 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10025980 [exp] 142 / 9e-35 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10028348 [exp] 141 / 2e-34 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G037000 [exp] 924 / 0 AT1G72990 922 / 0.0 beta-galactosidase 17 (.1.2) Potri.004G159800 [exp] 150 / 2e-37 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.003G038500 [exp] 148 / 1e-36 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 147 / 2e-36 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G232600 [exp] 146 / 4e-36 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.006G144500 [exp] 143 / 4e-35 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G018100 [exp] 143 / 5e-35 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.006G139100 [exp] 140 / 4e-34 AT5G20710 907 / 0.0 beta-galactosidase 7 (.1) Potri.001G025701 [exp] 138 / 2e-33 AT5G20710 1123 / 0.0 beta-galactosidase 7 (.1) Potri.001G025800 [exp] 133 / 5e-32 AT5G20710 1097 / 0.0 beta-galactosidase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10015616 pacid=23147192 polypeptide=Lus10015616 locus=Lus10015616.g ID=Lus10015616.BGIv1.0 annot-version=v1.0 ATGGCGAGAAGGAGAAGAGGAATAACCCATATAGCTTTACTCTTTCTTCTCCTCCTAGCTCTCGCTCTGCTCTGTGCCTTCATCCCCGTTTTCGCTCTGC TCCCTTCAATCTCACTCGCTGCCACCACTTCTCCTCGCCAAAAGGGCAAAGCGCGGATTAACCGTGCAGCCTGTCACACGTGTCTTGAAAGCATCTCAGG TGAGATAATGGGCTTTATTTCCGCTTTTGCCGGAGCGATTGCAGGAGCAATCAGCGCAGTATCCTCGTTCTTTGGCGGACTGGGTGCTTTCGGCCAGATT CTTGTCGGCGTCGGCTTTTTAGAATTGAAGAATCCTTGTATTATCAGGATTGGCGATGCTCGGACATTCGAGATTGCTGATGACAAGTTCTGGAAAGATG GACATCCGTATCGGATCATTGGTGGCGACTTGCATTACTTCCGTACCCTCCCCGAGTACTGGGAAGATAGGCTGTTGAAGGCAAAGGCATTGGGGTTGAA CACCATCCAAACATATGTTCCGTGGAATCTCCATGAGCCACAACCTGGAAAGCTGAGTTTCGAAGGCATTGCTGATCTGGTATCTTTCCTCAGATTGTGT CACAAGTTGGATTTACTTGTTATGCTTCGAGCTGGTCTTTATATATGCGGAGAATGGGACTTGGGAGGCTTCCCTGCTTGGTTATTAGCTACTGAGCCAC CTCTCAAGCTCAGATCATCCGACCGGAATTATCTTCAGTTGGTTGACAGATGGTGGGGAACCCTTCTTTATAACAATGGCGGTCCGGTTATTATGGTTCA GATAGAAAACGAATTTGGTTCGTATGGGGATGATCAAACCTATCTTCGTCATTTAGTCCGATTGGCCCGAAGACATCTTGGAGACGGCATAATCTTGTAT ACTACTGATGGAGGTGCTAGAGAGAATCTCGAACGAGGAACAATTCGTGGAGATTCAGTTTTCTCAGCTGTTGACTTCACCACTGGTGATGATCCATGGC CAATATTCAAGTTGCAGAAAGAGTTTAATGCAGTAGGAAAATCAGCACCACTCTCCACTGAATTCTATACAGGCTGGCTAACACATTGGGGCGAAAAGAT TGCGAAGACTGATGCTGACTTCACAGCTTCATCTTTGGGAAAGATATTGTCACGCAATGTTTCCGCCGTTCTTTATATGGCTCACGGTGGAACGAACTTC GGATTCTATAACGGAGCAAATACCGGCACTGATGAGTCCGATTACAAGCCAGACCTCACTTCCTATGATTACGATGCACCCATCAGTGAATCTGGGGACG TTGACGGCTCAAAGTTTCGAGCGTTGAGGAAGGTCATAGGGCGTTATAGCAAAACGTCTCTTCCTCCAATTCCTGTCAATACTGTTAAGCGAGGATATGG ACTGATTGAGTTACGCAAAACCGGTTCGCTGTTTCATTTACTTGATCTAGCAAAGCCTGGTAATGAAGTTGAATCCGAAGATCCATTACCCATGGAGTCA TTGGGACAGATGTTTGGTTTCATGGTATACAAAACTAACTTCTCTTCGAACGACACCGGAAATTCCTTGTACATACCAGAGGTTCATGACAGAGCTCAAG TGTTTACGTCGTGCACTTCTGGAAATAACCGGAGACCAAAGTACATTGGTACGATCGAGAGGTGGTCAAATAAGCAACTTGGCCTTCCTAATGCTAAATG CACCTCCAACACAAGCTTATTCATCTTGGTCGAGAATCTGGGCCGAATAAACTATGGGAAGTACATGTTTGACAGAAAGGGAATTCTTTCTTCTGTGTAT CTGGATGGCAAGGTTCTGCATGGATGGAGAATGATTTCAATTCCTTTGACCAACCTGAATGAACACTGGGGAATCAACCCGAATAATAATGTACTAAAAG TCAATATTTCCCACGTTTCGCGGACTAGTTCGCTCGCAGCAACACGAAAAAGGACAAAACACAAGTCAAGGAGTATTTCGGTTGAACCGACCTTCTACGC TGGTCGGTTCTTGGTCGAGGAAGCTGCGGATACGTTCTTACCTTTCGTAGGATGGGGAAAAGGAGTCGCGTTCGTTAATGATTTCAACATCGGAAGATAC TGGCCGTCTTTTGGACCACAATGCAGACTCTATGTCCCTGCTCCAGTCCTTAAGCATGGGGAGAATGTTCTGGTTGTATTTGAGCTGGAATCTCCGAATT CTGAGCTTTCAGTGCTCTCGGTTGATCGTCAAGATTTCACATGTGGTTCGAGGAAACAAAAGTTGCAGACATTGAATGTAATTTAA
AA sequence Show only first row Show all	>Lus10015616 pacid=23147192 polypeptide=Lus10015616 locus=Lus10015616.g ID=Lus10015616.BGIv1.0 annot-version=v1.0 MARRRRGITHIALLFLLLLALALLCAFIPVFALLPSISLAATTSPRQKGKARINRAACHTCLESISGEIMGFISAFAGAIAGAISAVSSFFGGLGAFGQI LVGVGFLELKNPCIIRIGDARTFEIADDKFWKDGHPYRIIGGDLHYFRTLPEYWEDRLLKAKALGLNTIQTYVPWNLHEPQPGKLSFEGIADLVSFLRLC HKLDLLVMLRAGLYICGEWDLGGFPAWLLATEPPLKLRSSDRNYLQLVDRWWGTLLYNNGGPVIMVQIENEFGSYGDDQTYLRHLVRLARRHLGDGIILY TTDGGARENLERGTIRGDSVFSAVDFTTGDDPWPIFKLQKEFNAVGKSAPLSTEFYTGWLTHWGEKIAKTDADFTASSLGKILSRNVSAVLYMAHGGTNF GFYNGANTGTDESDYKPDLTSYDYDAPISESGDVDGSKFRALRKVIGRYSKTSLPPIPVNTVKRGYGLIELRKTGSLFHLLDLAKPGNEVESEDPLPMES LGQMFGFMVYKTNFSSNDTGNSLYIPEVHDRAQVFTSCTSGNNRRPKYIGTIERWSNKQLGLPNAKCTSNTSLFILVENLGRINYGKYMFDRKGILSSVY LDGKVLHGWRMISIPLTNLNEHWGINPNNNVLKVNISHVSRTSSLAATRKRTKHKSRSISVEPTFYAGRFLVEEAADTFLPFVGWGKGVAFVNDFNIGRY WPSFGPQCRLYVPAPVLKHGENVLVVFELESPNSELSVLSVDRQDFTCGSRKQKLQTLNVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72990		BGAL17	beta-galactosidase 17 (.1.2)		Lus10015616 [exp]	0	1
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10004664 [exp]	7.6	0.7712
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Lus10040253 [exp]	8.8	0.7784
AT1G33030			O-methyltransferase family pro...		Lus10014825 [exp]	24.2	0.7338
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10027806 [exp]	27.0	0.7344
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Lus10031768 [exp]	30.8	0.7348
AT5G59190			subtilase family protein (.1)		Lus10000396 [exp]	32.9	0.7596
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10030376 [exp]	37.1	0.7577
					Lus10005904 [exp]	40.7	0.7572
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Lus10040088 [exp]	59.4	0.7265
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10032292 [exp]	59.7	0.7208

Compare expression of checked genes

Lus10015616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.