Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02485 234 / 4e-78 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G31600 66 / 1e-12 AtTRM9 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037635 [exp] 384 / 3e-137 AT4G02485 246 / 7e-83 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037263 [exp] 62 / 6e-11 AT1G31600 459 / 4e-162 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G131200 [exp] 265 / 1e-89 AT4G02485 239 / 2e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.003G106300 [exp] 75 / 1e-15 AT1G31600 450 / 2e-159 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10015618 pacid=23147264 polypeptide=Lus10015618 locus=Lus10015618.g ID=Lus10015618.BGIv1.0 annot-version=v1.0 ATGGACGAATCACATTGGCAGAAGGCGCTGATGATCGACGCGTTCGGCGAACCCTCAGGCAGCGAAGAAGACGAATCAACCGACGGCGATGCACTTGGCT CGATTTGGGAGCCTGTAGTCGAAATCGGAGGGCTATGGCTATGCAGAGACTTCCTATCTCCTCTGCAACAGTCGCGTCTCCTTAACTCCCTCCACCAAGT AGGATGGTTCAGTGAAGCTTCCAGCAACCAGGCTATGAGGTTCGGAGACCTTCCTCCGTGGGCGATCGAGCTTAGCGATTCTGTCCGGGAGGCGTTGGTA CTTGGGGAAGAACCAACCGGAGGATTGCCATTTCCGCCATACATTATGTCGAGAGAGCCGCTGTTCGACCAGTTGATTGCCAATCGGTACCAACCGGGCG AGGGGATATGTGCGCACGTTGATCTGATGAGGTTCGAGGATGGGATCGCGATCGTGTCGCTAGAGTCTTCGTGCGTGATGCATTTCAGCAGAGAGAGTTG CCGCGAGGAGGAAGAGAAAAGGGTTGCGGTGTACTTGTCCCCGGGATCGCTGGTGGTTCTATCGGGAGAGGCGCGGTACATATGGAAGCACGAGATCAAT CGGAAACCGGGGTTCCAGGTTTGGCAAGGTGAGGAGTTGGATCAGTTGCAGAGAACCTCCATAACCTTGAGAAGGCTTTGCCCCAGCTGA
AA sequence Show only first row Show all	>Lus10015618 pacid=23147264 polypeptide=Lus10015618 locus=Lus10015618.g ID=Lus10015618.BGIv1.0 annot-version=v1.0 MDESHWQKALMIDAFGEPSGSEEDESTDGDALGSIWEPVVEIGGLWLCRDFLSPLQQSRLLNSLHQVGWFSEASSNQAMRFGDLPPWAIELSDSVREALV LGEEPTGGLPFPPYIMSREPLFDQLIANRYQPGEGICAHVDLMRFEDGIAIVSLESSCVMHFSRESCREEEEKRVAVYLSPGSLVVLSGEARYIWKHEIN RKPGFQVWQGEELDQLQRTSITLRRLCPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02485			2-oxoglutarate (2OG) and Fe(II...		Lus10015618 [exp]	0	1
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Lus10008421 [exp]	11.4	0.8725
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10032200 [exp]	24.1	0.8643
AT5G55530			Calcium-dependent lipid-bindin...		Lus10016592 [exp]	29.1	0.8741
AT5G12230		MED19A	unknown protein		Lus10028832 [exp]	31.5	0.8679
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10018987 [exp]	40.9	0.8612
AT4G12760			unknown protein		Lus10001181 [exp]	41.9	0.8679
AT4G08240			unknown protein		Lus10009881 [exp]	56.8	0.8544
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Lus10037076 [exp]	60.1	0.8434
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10009217 [exp]	75.4	0.8537
AT1G04590		EMB2748	unknown protein		Lus10019008 [exp]	76.0	0.8518

Compare expression of checked genes

Lus10015618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.