Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57660 156 / 1e-43 CO COL5, ATCOL5 CONSTANS-like 5 (.1) AT2G24790 140 / 2e-38 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2) AT5G15850 117 / 2e-29 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT3G02380 115 / 8e-29 CO ATCOL2, COL2 CONSTANS-like 2 (.1) AT5G15840 111 / 5e-27 CO FG, CO CONSTANS, B-box type zinc finger protein with CCT domain (.1.2) AT5G24930 85 / 9e-18 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT1G49130 66 / 1e-11 CO COL8 B-box type zinc finger protein with CCT domain (.1.2) AT1G07050 61 / 9e-11 CCT motif family protein (.1) AT1G73870 61 / 4e-10 CO COL7 B-box type zinc finger protein with CCT domain (.1) AT1G68520 59 / 2e-09 CO COL6 B-box type zinc finger protein with CCT domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037636 [exp] 246 / 7e-80 AT5G57660 119 / 5e-32 CONSTANS-like 5 (.1) Lus10020105 [exp] 143 / 6e-39 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1) Lus10026909 [exp] 142 / 2e-38 AT5G24930 404 / 3e-140 CONSTANS-like 4 (.1) Lus10042431 [exp] 87 / 2e-19 AT5G24930 180 / 7e-55 CONSTANS-like 4 (.1) Lus10005106 [exp] 87 / 2e-18 AT3G02380 194 / 6e-59 CONSTANS-like 2 (.1) Lus10026238 [exp] 84 / 3e-18 AT5G24930 163 / 9e-48 CONSTANS-like 4 (.1) Lus10041096 [exp] 61 / 4e-10 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1) Lus10036419 [exp] 61 / 8e-10 AT5G48250 332 / 8e-112 B-box type zinc finger protein with CCT domain (.1) Lus10039695 [exp] 57 / 1e-08 AT4G15250 207 / 4e-63 B-box type zinc finger protein with CCT domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G096084 [exp] 175 / 1e-50 AT5G57660 283 / 5e-93 CONSTANS-like 5 (.1) Potri.006G173600 [exp] 174 / 4e-50 AT5G57660 315 / 1e-105 CONSTANS-like 5 (.1) Potri.006G267700 [exp] 154 / 6e-43 AT5G24930 361 / 1e-123 CONSTANS-like 4 (.1) Potri.018G013800 [exp] 154 / 7e-43 AT5G24930 348 / 2e-118 CONSTANS-like 4 (.1) Potri.004G108320 [exp] 113 / 1e-27 AT3G02380 302 / 8e-101 CONSTANS-like 2 (.1) Potri.017G107500 [exp] 108 / 6e-26 AT3G02380 330 / 7e-112 CONSTANS-like 2 (.1) Potri.001G281700 [exp] 61 / 2e-10 AT1G07050 138 / 8e-41 CCT motif family protein (.1) Potri.015G014000 [exp] 61 / 2e-10 AT5G53420 275 / 1e-92 CCT motif family protein (.1.2.3) Potri.015G054600 [exp] 61 / 6e-10 AT1G25440 272 / 2e-87 B-box type zinc finger protein with CCT domain (.1) Potri.010G125100 [exp] 60 / 2e-09 AT1G25440 311 / 3e-102 B-box type zinc finger protein with CCT domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [flax] [poplar] zf-B_box B-box zinc finger CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10015619 pacid=23147202 polypeptide=Lus10015619 locus=Lus10015619.g ID=Lus10015619.BGIv1.0 annot-version=v1.0 ATGGGAACAGAAATTGAACCCCCCTTCAACGCCACATCCATCGCGGCCACCGCCGCCGCAGTTGGTGGAGTATGGGGAGTCGTCGCGCCGCCGCCGGAGA CGGCGACGAAACGCCGCTTCGACGGCTCCCATGCTGCGTACATATGCCTTCCGTACGGCGACGAAGGGAGGAGGAGCCACCACCGCGAGAAGCAGGCCGC GGGGGCGGGGAGGGTATGGATGTGTGAAGTCTGTGAGCAAGCTCCGGCGGCTGGCACCTGCAAAGCCGACGCCGCTGCGCTCTGCATCGCCTGTGATTTG GACATCCATTCGGCGAACCCTGTTGCTCACCGCCATGAGCGTGTTCCGATTGGGCCGTTTGTGGACGCCTCTGCAAATGAAAACAGAGCGTATGAAAGCA GAGTGTATGAAAACAGGGCATACTCTGCTTCCGTCGGTGGCGGCAGGGAGGAGGTGGACGGGATTTCATGGGCTTTTCCGGGGAGTGGGTTTTCGCAATT GGATCAGAAGCAGGAAGGGCAGCAGAGGAAGGATCAGATTTTTGGGGAGATGGATGAGCTTTTGGAGCTTGAGTACGGCGGAGATCTATTGGGAGGGAGG TTTCAGCCGAGTTACAGCTACGGTGGTTCTGACGGAGTTGTGCCGGTGCAAAGCAAGGTGAATTCTGTTCTTCCGGCGCCGGCCGGAGCTGCTCCGGTGG TGGTGGGTCATCAGTTTCTGATGGGGAGCTGTGAAAATGGGTTGGAGTTGGATTTTAGCCGGTCAAAGCTCTGTTCTTTTAACTACCCAGCTCAAAGTCT CAGCAACAGTGTATCATCATCCTCCCATGATGCTGGAGTTGTGCCAGATGGAATCTGCTCCAACAACAATTCAATCTCTGAAATTTCCTTTTCGTTTGAT CACAACAACAATCCAACACTAAATCATCACACTCAAGTGGCTCCTCCGGCGGCCAAGCAGCAGCGCGGCTTGGACCGGATGGCCAGGGTGATGAGGTACA GGGAGAAGAGGAAGAATCGGAAGTTCGAGAAGACAATTAGGTACGCATCTCGCAAGGCTTACGCCGAGACCAGGCCCAGGATCAAGGGGCGGTTCGCCAA GCGTTGTTCTCCTTCCTTTTCCGAGAACAACAACAGCAACAACGAACCAGCTGATCATCAACATCACTTTGACGAAATGGTGCTCTATGGCTCATCTTCA TCTCTCTCGTTCTTTAGCAATGTGGATGGTCGCTATGGCGTTGTTCCATCGTTCAGATGA
AA sequence Show only first row Show all	>Lus10015619 pacid=23147202 polypeptide=Lus10015619 locus=Lus10015619.g ID=Lus10015619.BGIv1.0 annot-version=v1.0 MGTEIEPPFNATSIAATAAAVGGVWGVVAPPPETATKRRFDGSHAAYICLPYGDEGRRSHHREKQAAGAGRVWMCEVCEQAPAAGTCKADAAALCIACDL DIHSANPVAHRHERVPIGPFVDASANENRAYESRVYENRAYSASVGGGREEVDGISWAFPGSGFSQLDQKQEGQQRKDQIFGEMDELLELEYGGDLLGGR FQPSYSYGGSDGVVPVQSKVNSVLPAPAGAAPVVVGHQFLMGSCENGLELDFSRSKLCSFNYPAQSLSNSVSSSSHDAGVVPDGICSNNNSISEISFSFD HNNNPTLNHHTQVAPPAAKQQRGLDRMARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRCSPSFSENNNSNNEPADHQHHFDEMVLYGSSS SLSFFSNVDGRYGVVPSFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Lus10015619 [exp]	0	1
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Lus10037636 [exp]	2.8	0.8079
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10010100 [exp]	3.0	0.8383
AT5G64170			dentin sialophosphoprotein-rel...		Lus10015846 [exp]	4.5	0.8368
AT5G59480			Haloacid dehalogenase-like hyd...		Lus10040786 [exp]	4.9	0.7535
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10012602 [exp]	5.7	0.8114
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10012445 [exp]	8.2	0.7371
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10032934 [exp]	9.0	0.7673
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10042292 [exp]	9.2	0.7808
AT3G55580			Regulator of chromosome conden...		Lus10040266 [exp]	10.5	0.7585
AT2G41250			Haloacid dehalogenase-like hyd...		Lus10027299 [exp]	11.2	0.7211

Compare expression of checked genes

Lus10015619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.