Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63100 334 / 2e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G44600 152 / 9e-44 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G44590 141 / 3e-39 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037637 [exp] 533 / 0 AT5G63100 323 / 7e-111 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10038404 [exp] 162 / 5e-47 AT5G44600 301 / 7e-101 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001217 [exp] 117 / 3e-30 AT5G44600 197 / 1e-60 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G082432 [exp] 382 / 7e-133 AT5G63100 360 / 8e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G073000 [exp] 166 / 7e-49 AT5G44600 331 / 1e-112 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10015621 pacid=23147184 polypeptide=Lus10015621 locus=Lus10015621.g ID=Lus10015621.BGIv1.0 annot-version=v1.0 ATGTTACTAACAACTAGAGCTTCCGTTGGCCTCCGGCCGCGGCCTCCAGTCCATTTCGCCGGCCACCGGCAGCCACAATCATACAAACCTCTCCGATTAA AGGCCAAATCGGAAGAGACCTTCATAGAAGACGACGAAGGTGGAATACTAATGGAAGACGTGAAAATCCTGGCCCGATTCAAGTCGCGATACAACTACAT TCGAGTACTCGAAGTCGCCAGAAGAGCCGAGCATCCTCTTGCCGGATCTCGCCTCCTCCTCCTCGACACTCCGGGAAACATCCACAGCATGTCCTACCGC TTCACCAACGACTCCCTCACCAACGCTTACTACGACGTTTTCGCTACCTTACCGCCGATTCTCCCGCAATCCGGAGCTCCGATCGCAATTCTAGGGTTCG GAGCCGGCTCCGCAGCTAAGTTGATTCTGGAAATGTACCCTGATGTGACGATCCACGGCTGGGAGCTGGATCCGTCGGTGATCGACGTCGGGAGGGAGTT CTTCGGACTCAAGAAGCTCGAATTCCAGCACAAGGACAGGCTGTCGATCTTCATCGGAGACGCTCTGACTTCCGGAGTGAAAGATGGATACGCTGGGATT CTGGTGGACTTGTTTGCCAAAGGGAGTGTGATACCGGAGCTTCAGGATCCTAATACATGGGAGATGCTCAGAAGGTGTTTGATGAAATGCGGCAGAGTGA TGGTTAACGTTGGAGGAAGCTGCGTGGAGTCCGAGAACAAACGGCGAGATGGGAAGGTGGTTATGGAGGATACTCTGAACGCAATGCATAAGGTCTTTGG TGATCAGATTCATGTCTTGGAGCTCGGAGATCAATACTTCGATGATAGCACGTTGGCGCTTACGGGTGCTATGCCGGATCGCAAAGCTTGGAAGAAGGCC ATTCCGATTAAGGCATTGAGGGGTTACGCCGATATGTGGAAGCCATTCTAA
AA sequence Show only first row Show all	>Lus10015621 pacid=23147184 polypeptide=Lus10015621 locus=Lus10015621.g ID=Lus10015621.BGIv1.0 annot-version=v1.0 MLLTTRASVGLRPRPPVHFAGHRQPQSYKPLRLKAKSEETFIEDDEGGILMEDVKILARFKSRYNYIRVLEVARRAEHPLAGSRLLLLDTPGNIHSMSYR FTNDSLTNAYYDVFATLPPILPQSGAPIAILGFGAGSAAKLILEMYPDVTIHGWELDPSVIDVGREFFGLKKLEFQHKDRLSIFIGDALTSGVKDGYAGI LVDLFAKGSVIPELQDPNTWEMLRRCLMKCGRVMVNVGGSCVESENKRRDGKVVMEDTLNAMHKVFGDQIHVLELGDQYFDDSTLALTGAMPDRKAWKKA IPIKALRGYADMWKPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63100			S-adenosyl-L-methionine-depend...		Lus10015621 [exp]	0	1
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10026838 [exp]	11.4	0.7361
AT3G13180			NOL1/NOP2/sun family protein /...		Lus10022523 [exp]	14.6	0.7424
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10035109 [exp]	22.7	0.7182
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037616 [exp]	23.9	0.7128
AT5G18590			Galactose oxidase/kelch repeat...		Lus10043420 [exp]	25.1	0.6916
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041680 [exp]	25.9	0.6117
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10033255 [exp]	29.6	0.7014
AT2G04940			scramblase-related (.1)		Lus10004532 [exp]	29.7	0.7133
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10007117 [exp]	32.9	0.6765
AT5G08110			nucleic acid binding;ATP-depen...		Lus10013505 [exp]	38.2	0.6819

Compare expression of checked genes

Lus10015621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.