Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17620 183 / 5e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G11890 132 / 4e-37 EMB3135 EMBRYO DEFECTIVE 3135, unknown protein AT2G27080 74 / 2e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT1G65690 69 / 2e-13 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G36970 67 / 4e-13 NHL25 NDR1/HIN1-like 25 (.1) AT1G54540 65 / 4e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G21130 64 / 6e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G11650 60 / 2e-10 NHL2 NDR1/HIN1-like 2 (.1) AT2G46300 60 / 2e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06320 59 / 2e-10 NHL3 NDR1/HIN1-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037638 [exp] 393 / 2e-139 AT1G17620 201 / 4e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003824 [exp] 273 / 1e-92 AT1G17620 191 / 5e-60 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10026428 [exp] 158 / 3e-47 AT5G11890 209 / 7e-67 EMBRYO DEFECTIVE 3135, unknown protein Lus10024987 [exp] 88 / 2e-21 AT5G11890 87 / 5e-21 EMBRYO DEFECTIVE 3135, unknown protein Lus10010103 [exp] 70 / 4e-14 AT4G01410 198 / 7e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007364 [exp] 68 / 4e-13 AT1G65690 267 / 6e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016962 [exp] 59 / 3e-10 AT2G35980 237 / 3e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021288 [exp] 58 / 1e-09 AT2G35980 237 / 2e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020783 [exp] 57 / 2e-09 AT5G36970 229 / 2e-75 NDR1/HIN1-like 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G039400 [exp] 255 / 2e-85 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G200700 [exp] 249 / 5e-83 AT1G17620 168 / 2e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.018G052500 [exp] 167 / 7e-51 AT5G11890 198 / 3e-62 EMBRYO DEFECTIVE 3135, unknown protein Potri.006G228600 [exp] 166 / 4e-50 AT5G11890 171 / 4e-52 EMBRYO DEFECTIVE 3135, unknown protein Potri.012G145500 [exp] 75 / 1e-15 AT5G36970 238 / 2e-78 NDR1/HIN1-like 25 (.1) Potri.002G167300 [exp] 74 / 2e-15 AT2G46300 177 / 5e-55 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G148200 [exp] 74 / 2e-15 AT5G36970 227 / 2e-74 NDR1/HIN1-like 25 (.1) Potri.006G204300 [exp] 70 / 3e-14 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G106100 [exp] 69 / 1e-13 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G067100 [exp] 69 / 1e-13 AT1G54540 203 / 3e-65 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10015622 pacid=23147230 polypeptide=Lus10015622 locus=Lus10015622.g ID=Lus10015622.BGIv1.0 annot-version=v1.0 ATGGCGGAGAAAATCTATCCAGCCAAACCCGCCACCGACACCGCGGCGGCGCCACCACCGCCACCGCCAGCACCAACAACCGCCACCGCCGCATTTCCCG CGACGAAATCGCAACTCTACGGCGCCAATCGCCCAGCCTACCGTCCTCAACCTCAACGCAAGTTCCGCAGCCGGAGGAGCTGCTGCTGCCGCCTTTGCTT CTGGATCACACTAATCCTCCTCCTCCTAATTCTCCTCGCCGCCATCGCCGGCTCCGCCGTCTACCTAATCTACCGCCCCCATCGCCCTACATTCGACGTC TCCGGAGTGCGGATATCGGCTCTTAACGTCTCCTCCACCTCCCAGCTCACTTCCAACATCGCCGTCAACATCACCGCTCGGAACCCTAACAAGAACGTCG TATTCGTCTACGATCCGATCGGAATTTCGTTGCTATCCGATGGAGTCGATTTGGGGGTAGGAACTGTACCAGCGTTTGTTCACGGGAAGAAGAACTCGAC GATGCTGAAACTATCGATTAATAGCGGAGGGCAGAAGAAGCTTGAGGATTCCGCCGCCGCGAAGCTGAGGAAGGAGCTGAAGGGGAAAAACGGCGTCGGG TTGAGGATCGTTGTTGATACCAAAGTGAAGGTGAAGATGGGAGGGATGAAGACTCCGAAGTTTCCGATTCGAGTTTCCTGCTCAGGGATTAAAGGTTCGG CGCCGACGGGGAAATCGCCGACTACTGGATCTGTTTCCGGCGCCGACTGTAAAGTCGATTTGAGAGTCAAGATCTGGAAGTGGACTTTCTGA
AA sequence Show only first row Show all	>Lus10015622 pacid=23147230 polypeptide=Lus10015622 locus=Lus10015622.g ID=Lus10015622.BGIv1.0 annot-version=v1.0 MAEKIYPAKPATDTAAAPPPPPPAPTTATAAFPATKSQLYGANRPAYRPQPQRKFRSRRSCCCRLCFWITLILLLLILLAAIAGSAVYLIYRPHRPTFDV SGVRISALNVSSTSQLTSNIAVNITARNPNKNVVFVYDPIGISLLSDGVDLGVGTVPAFVHGKKNSTMLKLSINSGGQKKLEDSAAAKLRKELKGKNGVG LRIVVDTKVKVKMGGMKTPKFPIRVSCSGIKGSAPTGKSPTTGSVSGADCKVDLRVKIWKWTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17620			Late embryogenesis abundant (L...		Lus10015622 [exp]	0	1
AT1G17620			Late embryogenesis abundant (L...		Lus10037638 [exp]	1.0	0.9845
AT5G66120			3-dehydroquinate synthase, put...		Lus10028429 [exp]	1.4	0.9734
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10022680 [exp]	2.4	0.9707
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039175 [exp]	3.5	0.9660
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Lus10032236 [exp]	6.6	0.9644
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10031637 [exp]	6.9	0.9546
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10008112 [exp]	7.4	0.9675
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10009428 [exp]	8.1	0.9599
AT4G32750			unknown protein		Lus10022138 [exp]	8.2	0.9369
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10016872 [exp]	9.0	0.9650

Compare expression of checked genes

Lus10015622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.