Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72970 778 / 0 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT3G13870 649 / 0 GOM8, RHD3 GOLGI MUTANT 8, Root hair defective 3 GTP-binding protein (RHD3) (.1), Root hair defective 3 GTP-binding protein (RHD3) (.2) AT1G72960 626 / 0 Root hair defective 3 GTP-binding protein (RHD3) (.1) AT5G45160 578 / 0 Root hair defective 3 GTP-binding protein (RHD3) (.1) AT1G12570 572 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT3G56060 544 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 530 / 5e-177 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT5G51930 496 / 1e-163 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 477 / 8e-157 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 395 / 3e-126 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037640 [exp] 1112 / 0 AT1G72970 768 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10003176 [exp] 913 / 0 AT1G72970 822 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10037641 [exp] 897 / 0 AT1G72960 1108 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10024487 [exp] 629 / 0 AT1G12570 709 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10017827 [exp] 613 / 0 AT1G12570 710 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10002957 [exp] 607 / 0 AT1G12570 701 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10018282 [exp] 580 / 0 AT5G45160 1055 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10040630 [exp] 577 / 0 AT5G45160 1221 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10038333 [exp] 577 / 0 AT5G45160 1217 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G200800 [exp] 885 / 0 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.003G039000 [exp] 876 / 0 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.003G038900 [exp] 695 / 0 AT3G13870 1220 / 0.0 GOLGI MUTANT 8, Root hair defective 3 GTP-binding protein (RHD3) (.1), Root hair defective 3 GTP-binding protein (RHD3) (.2) Potri.001G201000 [exp] 681 / 0 AT1G72960 1204 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.001G111500 [exp] 657 / 0 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.015G112700 [exp] 582 / 0 AT5G45160 1161 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.008G009600 [exp] 466 / 1e-152 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.012G116210 [exp] 422 / 2e-133 AT5G45160 719 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116700 [exp] 421 / 2e-133 AT5G45160 727 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116130 [exp] 420 / 2e-132 AT5G45160 707 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF05879 [flax] [poplar] RHD3 Root hair defective 3 GTP-binding protein (RHD3) CL0023 [flax] [poplar] PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10015623 pacid=23147188 polypeptide=Lus10015623 locus=Lus10015623.g ID=Lus10015623.BGIv1.0 annot-version=v1.0 ATGGGGCCTCAAAGTAGCGGTACATTCCCCGCATTTTTAACCATAACTGAACTATGTCCCGAGGAGCCTATTCCGAATTTCCGCACTATAACAGAGTCTC AAACTACAAAGGGTATTTGGCTAGCAAAGTGTGCTGAAATCGAACCTTGTACCTTGGTAATGGATTTGGAAGGAACAGACGGAAGAGAGCGTGGAGAGGA TGATACAGCATTTGAGAAGCAAAGTGCACTGTTTGCCCTAGCTGTTTCAGATATTGTGCTGATTAACATGTGGTGTCACGATATTGGCCGCGAACAAGCT GCAAATAAGCCGCTCTTGAAGACGGTATTTCAGGTGATGTTACGGTTGTTTAGTCCTCGCAAGACGACATTAATGTTCGTAATACGTGACAAAAGCAAGA CACCTTTAGAGAATTTAGAACCAGTCCTCAGAGAAGACATTCAGAAGATATGGGACTCTGTTCCAAAGCCACAAGCTCATGAGTCAACCCCACTTAGTGA ATTCTTCAATGTTGGTAATTTGAGAAAAAGATTCAACCAATCGATTGCGCCCGGTGGACTTGCCGGTGACCGGAGAGGTGCAGTTCCTGCATCAGGATTT TCTTTCAGTTCACTCGCTATATGGAAGGTTATCAAGGAGAACAAAGACCTTGATCTCCCTGCTCATAAGGTTATGGTCGCTACTGTCCGATGTGAAGAAA TTGCTCATGAAAAGTATACCGAATTCGGCAAAAATCAGGAGTGGTGTGAAGTGGAAGAGGCAGTACAAACTGGTTATGTTCAAGGGTTTGGAAAGAAGCT CAGTTCAATTCTCAACCTTGTGCAACCAGCCTACCAAACCATGTTAGGGCACATAAGGGCAGGAACCTTTGACAAGTTCAAGGAAGCATTTGAGAAGGCT CTCAATGCTGGAGAGGGGTTCTCCTTGGCTTCCACTACTTGTGCCCAGTCGTTTATGTCTCAGTTCGACGAAGCCTGTACAGATGCTGTAATTCACCAAG CGAATTGGGATGCGTCCAAAGTGAAAGATAAGCTCCGTCGCGACATTGATTCCCACATTGCCACCGTCCGTGCTGCGAAACTCGCCGAACTTACTTCATC ATTCGAGACAAAGCTAAACCATGCGTTAGCAGCACCGGTGGAAGCGCTGTTGGATGGGGCTAACCACGAGACATGGTCATCGATAAGAAAGCTATTGAAG CGCGAGTCTGACTCAGCCCTCTCGGAAATGACCCACGATCTCAAAGGCTTTGACATGGACGAAAAGGCGAAGGAAGAGATGCTTGCGAACTTGGAGAACC ATGCCAAAAGTGTCGTCGAATCTAAAGCCAAGGAAGAAGCTGCTAGGGTTCTTATTCGTATGAAGGACAGGAATCCATTTTATTTGGCTGTGATATTCGT TGGGTTTCTACTTGCTAAAGCCTTGTGGGTGCAAATGGATGTTGCTGGTGAATTTCGACATGGTGCTCATCAACATCAAATATCAGCATCACAAGTAGTG AAGACTGAAGATGAGCATCAGAAGCAAGCTCTTCTTCCTCTCATCCTTCATCCTCCTCCTCTGTTCCTCCCAAGTTCTACTCCTCTTTGTCGGTATGTTT CGATGGTGAAATTGTGTGTTTTTCCCCTGGCAGCCACTGGATTCTATAAGTACAAGTATCCATTCATAAGGAAAGTAAGCACATTCCAACCAAACACCCT CTACGACTACATCATTGTCGGCGGTGGAACAGCTGGGTGTCCATTAGCAGCAACACTGTCACAGAACTTCACAGTTCTGTTGCTTGAGAGAGGAGGTGTC CCATTTGCAAACCCTAATGTCACATTCCTCAAGAACTTCCACATTACACTGGCTGATACTTCTCCAACCTCTGCTTCTCAGTTCTTTGTCTCCAATGATG GTGTTCTTAACTCCAGAGCCAGAGTTTTGGGTGGTGGGACTTCCATCAATGCTGGCTTCTACACTAGAGCCAGCCAAAGGTTTATCGAAAAGGTTGGTTG GGACACAAGGCTAGTGAACCAATCATACCCATGGGTTGAGCAACAAATAGTCCACAAGCCACAAGTAGCACAATGGCAACTTGCAGTAAGAGACAGCCTA CTAGACCTTGGCATCTCACCTGACAATGGCTTCACCTATGACCACATCTCGGGAACCAAATTCGGTGGCACGATCTTCGACCGGTTCGGACGAAGACACA CATCAGCCGAGCTCCTCGCCACCGCCAACTCTCAAGCCCTAACCGTCCTGGTCCACGCCACGGTCCAAAAAGTACTCTTTGACACCAATGCCCCCAACAG CACAACAAGTCCAAGAGCCGTTGGTGTTGAGTTCAAGGACGAAACGGGGAAATACCACCGAGCATTGTTAAGGGACGACGATGGTACGAAAAGCGAGGTC ATTCTCTCGTGTGGCGCGATCGGTACACCTCAGATGCTGCTGCTCAGTGGGATTGGACCAAGAAATGATCTCGAAAAGCTGAACATCTCAGTAGTGGTGG AGAATATCCATGTTGGTCAAGGAATGGCTGATAATCCGATGAATTCGATCTTCGTTCCCTCGAACGAACCGGTTAACCAATCGCTTATCCAGACCGTTGG AATCACAAAGCTAGGAGTCTACATTGAGGCAAGCAGTGGGTTTGGACAGTCCAATGACAGCATACAGTGCCACCATGGGATCATGTCAGCCGAAATCGGG CAGATATCTACAATCCCTCCGAAGCAAAGGACTCCCGAGGCGATCCGAGCTTACATCAACAAAAAGAAAGATTTGCCATATGAGGCATTCAAAGGAGGGT TCATTTTGGAAAAAATCGCGAACCCGTTTTCAAAAGGACAACTCACGTTGATCGACACGAACGTTGATCAAAACCCCTCGGTGACATTCAACTACTTCAG CGATCCGAGGGACCTACAGCGATGCGTGGAAGGGGTCCGCCTGGCTACGAAGATTGTGCAGACGAAGCGATTTACAGAGATGGTGAAGTGCGACAGTCAG ACTGTGGAGAAGATTCTGAATGCTAGTGTACATGCCAATGTTAACTTGGTCCCCAAGCAAGCGAATGACACCGAGTCGCTCGAGCAGTTCTGTAAGGACA CTGTGATCAGTATCTGGCATTATCATGGTGGATGTCATGTTGGAAAAGTGGTGGATTCGGAGTACAAAGTGCTTGGTGTGGATAGGCTTCGTGTCGTTGA TGGCTCGACTTTCAATGAATCGCCAGGGACTAATCCCCAAGCTACTGTCCTGATGATGGGAAGGTACATGGGGCTGAAGATTTTGGAAGAGAGGCTGGGG AAAGCAGCAGCTGGTGTCTGA
AA sequence Show only first row Show all	>Lus10015623 pacid=23147188 polypeptide=Lus10015623 locus=Lus10015623.g ID=Lus10015623.BGIv1.0 annot-version=v1.0 MGPQSSGTFPAFLTITELCPEEPIPNFRTITESQTTKGIWLAKCAEIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQA ANKPLLKTVFQVMLRLFSPRKTTLMFVIRDKSKTPLENLEPVLREDIQKIWDSVPKPQAHESTPLSEFFNVGNLRKRFNQSIAPGGLAGDRRGAVPASGF SFSSLAIWKVIKENKDLDLPAHKVMVATVRCEEIAHEKYTEFGKNQEWCEVEEAVQTGYVQGFGKKLSSILNLVQPAYQTMLGHIRAGTFDKFKEAFEKA LNAGEGFSLASTTCAQSFMSQFDEACTDAVIHQANWDASKVKDKLRRDIDSHIATVRAAKLAELTSSFETKLNHALAAPVEALLDGANHETWSSIRKLLK RESDSALSEMTHDLKGFDMDEKAKEEMLANLENHAKSVVESKAKEEAARVLIRMKDRNPFYLAVIFVGFLLAKALWVQMDVAGEFRHGAHQHQISASQVV KTEDEHQKQALLPLILHPPPLFLPSSTPLCRYVSMVKLCVFPLAATGFYKYKYPFIRKVSTFQPNTLYDYIIVGGGTAGCPLAATLSQNFTVLLLERGGV PFANPNVTFLKNFHITLADTSPTSASQFFVSNDGVLNSRARVLGGGTSINAGFYTRASQRFIEKVGWDTRLVNQSYPWVEQQIVHKPQVAQWQLAVRDSL LDLGISPDNGFTYDHISGTKFGGTIFDRFGRRHTSAELLATANSQALTVLVHATVQKVLFDTNAPNSTTSPRAVGVEFKDETGKYHRALLRDDDGTKSEV ILSCGAIGTPQMLLLSGIGPRNDLEKLNISVVVENIHVGQGMADNPMNSIFVPSNEPVNQSLIQTVGITKLGVYIEASSGFGQSNDSIQCHHGIMSAEIG QISTIPPKQRTPEAIRAYINKKKDLPYEAFKGGFILEKIANPFSKGQLTLIDTNVDQNPSVTFNYFSDPRDLQRCVEGVRLATKIVQTKRFTEMVKCDSQ TVEKILNASVHANVNLVPKQANDTESLEQFCKDTVISIWHYHGGCHVGKVVDSEYKVLGVDRLRVVDGSTFNESPGTNPQATVLMMGRYMGLKILEERLG KAAAGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10015623 [exp]	0	1
AT2G38530		cdf3, LP2, LTP2	cell growth defect factor-3, l...		Lus10025234 [exp]	2.0	0.8611
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10037640 [exp]	3.0	0.8734
AT4G10360			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10019130 [exp]	3.3	0.8299
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039302 [exp]	6.0	0.8360
AT1G01390			UDP-Glycosyltransferase superf...		Lus10037115 [exp]	7.3	0.8302
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10007634 [exp]	8.4	0.8381
AT3G09870			SAUR-like auxin-responsive pro...		Lus10001398 [exp]	10.6	0.8310
AT3G01550		ATPPT2	phosphoenolpyruvate (pep)/phos...		Lus10022257 [exp]	10.8	0.8427
AT5G16030			unknown protein		Lus10033537 [exp]	12.5	0.8488
AT5G01790			unknown protein		Lus10030550 [exp]	13.9	0.8105

Compare expression of checked genes

Lus10015623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.