Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13772 1066 / 0 AtTMN7 transmembrane nine 7 (.1) AT1G55130 1036 / 0 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT2G24170 934 / 0 Endomembrane protein 70 protein family (.1) AT5G10840 927 / 0 Endomembrane protein 70 protein family (.1) AT5G25100 927 / 0 Endomembrane protein 70 protein family (.1.2) AT5G35160 511 / 2e-174 Endomembrane protein 70 protein family (.1.2) AT4G12650 461 / 7e-155 Endomembrane protein 70 protein family (.1) AT1G14670 339 / 2e-108 Endomembrane protein 70 protein family (.1) AT2G01970 338 / 3e-108 Endomembrane protein 70 protein family (.1) AT5G37310 333 / 4e-106 Endomembrane protein 70 protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037643 [exp] 1196 / 0 AT3G13772 1134 / 0.0 transmembrane nine 7 (.1) Lus10026254 [exp] 944 / 0 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10000222 [exp] 942 / 0 AT5G10840 1071 / 0.0 Endomembrane protein 70 protein family (.1) Lus10042415 [exp] 942 / 0 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10027831 [exp] 511 / 3e-174 AT5G35160 1104 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10005060 [exp] 505 / 7e-172 AT5G35160 1100 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10016072 [exp] 494 / 7e-168 AT4G12650 1123 / 0.0 Endomembrane protein 70 protein family (.1) Lus10019073 [exp] 384 / 2e-125 AT5G35160 749 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10042286 [exp] 328 / 4e-104 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G038700 [exp] 1098 / 0 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.018G106600 [exp] 950 / 0 AT2G24170 971 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G018400 [exp] 942 / 0 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1) Potri.006G184200 [exp] 942 / 0 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1) Potri.006G264500 [exp] 926 / 0 AT5G10840 1059 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G113500 [exp] 506 / 1e-172 AT5G35160 1127 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.006G189300 [exp] 504 / 9e-172 AT5G35160 1122 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.002G217300 [exp] 483 / 2e-163 AT4G12650 1122 / 0.0 Endomembrane protein 70 protein family (.1) Potri.014G172200 [exp] 476 / 8e-161 AT4G12650 1115 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144181 [exp] 345 / 8e-111 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [flax] [poplar] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Lus10015624 pacid=23147272 polypeptide=Lus10015624 locus=Lus10015624.g ID=Lus10015624.BGIv1.0 annot-version=v1.0 ATGGCCACCACCATCTTCTCCTTCTTCGCCGCCTTCCTCCTCCTCCTTTCCTCTCCCGCCAACTCCTTCTACCTCCCCGGCGTCGCCCCTCGCGACTTCC AGCGAGGTAGTGTCCTCAATGTTAAAGTGAACAAACTGTCGTCTACGAAGACGCAGCTCCCGTACGACTACTATTTCCTGAAATACTGTAAGCCACAGAA GATCGAGAACAGTGCAGAGAATCTGGGAGAGGTCCTTAGAGGTGATCGCATTGAGAATTCCGTCTATACTTTTGAAATGATGGAAGATCAATCATGCAAA ATAGCTTGTAAGGCAACCCTTGATGACAAATCGGCCAAGAATTTCAAGGAGAAGATTGACGATGAGTATCGGGTTAACATGATACTGGATAATCTTCCTG TAGCTGTCATCAGAAAAAGGAGGGATGGTGCTCAGGCAACTACTTACGAACATGGTTTTCGAGTTGGGTTCAAAGGAAATTATGCAGGGAGTAAAGAGGA GAAATACTTTATCAATAACCACTTAAGCTTTACAGTAATGTATCACAGGGATCCTGAATCAGGATCTGCTCGAATTGTCGGGTTCGAGGTTTCACCAAGC AGCATTAATCATGAATACAAGGAATGGAATGATAAGAATACTCAGTTGACTACTTGCAATAAGGACACTAAGAACTTGATGCAAGGTAGCATTGTCCCTC AAGAAGTTGATAACGCCAAGGACGTGGTGTTCACGTACGATGTAGTCTTCAAGGATAGCGATATTAAATGGGCGTCACGCTGGGACACATACCTCCTCAT GAACGACGATCAGATCCACTGGTTCTCCATCATCAACTCGTTGATGATTGTGCTGTTCCTCTCCGGTATGGTAGCCATGATCATGCTTCGAACTCTGTAC AGAGACATTGCAAACTACAATCAGTTGGAAACCCAAGACGAGACTCAGGAGGAAACCGGGTGGAAACTAGTCCACGGAGATGTATTCCGAGCACCTACAA ATGCCGGTTTACTATGTGTTTATCTCGGTACGGGAGTGCAGATCTTCGGTATGACTTTGGTGACCATGATATTCGCATTACTGGGATTCCTTTCTCCTTC GAACCGAGGCGGTCTCATGACTGCTATGGTCCTTTTGTGGGTCTTCATGGGGATATTCGGCGGATATGCCTCAGCTCGTCTGTACAAAATGTTCAAAGGC ACCGAGTGGAAGAGGAACACCTTGAAAACCGCGTTCATGTTTCCCGGTATCCTTTTTGCAGTCTTCTTCGTTCTGAACGCTCTGATTTGGGGAGAGAAGT CTTCCGGTGCTGTGCCTTTCGGGACCATGTTCGCTCTGGTTTGCTTATGGTTTGGCATCTCAGTCCCTCTAGTCTTCGTTGGTAGTTACTTGGGTTTCAA GAAACCAGCAATCGAAGATCCCGTGAAAACGAACAAGATCCCAAGGCAAGTCCCCGAGCAAGCGTGGTACATGAAGCCGGTCTTCTCCATCCTCATCGGA GGGATTCTCCCGTTTGGTGCTGTATTCATCGAGCTCTTCTTCATCTTGACGTCGATCTGGCTGAACCAGTTCTACTACATCTTCGGCTTTCTCTTCATAG TGTTTGTCATCTTATTGATCACCTGTGCTGAGATTACTATGGTGCTTTGCTACTTCCAGCTGTGCAGCGAGGACTACCAGTGGTGGTGGAGATCTTACCT CACTGCTGGCTCTTCGGCTGTGTACCTTTTCCTCTATTCGATCTTCTACTTCTTCACCAAGTTGGAAATCACCAAGTTCGTCTCGGGGGTCCTCTACTTT GGGTACATGGTGATTATCTCATACGCCTTCTTCGTGCTGACTGGAACTATAGGGTTCTACGCTTGTTTCTGGTTCGTCCGAAAGATATACTCGTCTGTCA AAATCGACTGA
AA sequence Show only first row Show all	>Lus10015624 pacid=23147272 polypeptide=Lus10015624 locus=Lus10015624.g ID=Lus10015624.BGIv1.0 annot-version=v1.0 MATTIFSFFAAFLLLLSSPANSFYLPGVAPRDFQRGSVLNVKVNKLSSTKTQLPYDYYFLKYCKPQKIENSAENLGEVLRGDRIENSVYTFEMMEDQSCK IACKATLDDKSAKNFKEKIDDEYRVNMILDNLPVAVIRKRRDGAQATTYEHGFRVGFKGNYAGSKEEKYFINNHLSFTVMYHRDPESGSARIVGFEVSPS SINHEYKEWNDKNTQLTTCNKDTKNLMQGSIVPQEVDNAKDVVFTYDVVFKDSDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMLRTLY RDIANYNQLETQDETQEETGWKLVHGDVFRAPTNAGLLCVYLGTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGIFGGYASARLYKMFKG TEWKRNTLKTAFMFPGILFAVFFVLNALIWGEKSSGAVPFGTMFALVCLWFGISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQVPEQAWYMKPVFSILIG GILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLITCAEITMVLCYFQLCSEDYQWWWRSYLTAGSSAVYLFLYSIFYFFTKLEITKFVSGVLYF GYMVIISYAFFVLTGTIGFYACFWFVRKIYSSVKID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10015624 [exp]	0	1
AT3G58050			unknown protein		Lus10021073 [exp]	2.6	0.8797
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010933 [exp]	5.3	0.8575
AT1G13940			Plant protein of unknown funct...		Lus10021644 [exp]	6.2	0.8098
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	8.8	0.8536
AT1G69550			disease resistance protein (TI...		Lus10000945 [exp]	8.8	0.7834
AT2G17030			F-box family protein with a do...		Lus10025100 [exp]	11.6	0.7910
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10037643 [exp]	12.0	0.8583
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10002844 [exp]	14.8	0.8590
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10036337 [exp]	15.5	0.8559
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016124 [exp]	17.2	0.8450

Compare expression of checked genes

Lus10015624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.