Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13750 1392 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G36360 1112 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT4G26140 1023 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT3G52840 989 / 0 BGAL2 beta-galactosidase 2 (.1) AT1G45130 970 / 0 BGAL5 beta-galactosidase 5 (.1) AT5G56870 963 / 0 BGAL4 beta-galactosidase 4 (.1) AT2G28470 925 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT2G32810 853 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G63810 783 / 0 BGAL10 beta-galactosidase 10 (.1) AT5G20710 754 / 0 BGAL7 beta-galactosidase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037644 [exp] 1627 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10000701 [exp] 1436 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10025980 [exp] 1100 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2) Lus10041798 [exp] 1096 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10028348 [exp] 1014 / 0 AT4G36360 1348 / 0.0 beta-galactosidase 3 (.1.2) Lus10006009 [exp] 985 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10028848 [exp] 957 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10008974 [exp] 950 / 0 AT4G26140 1068 / 0.0 beta-galactosidase 12 (.1.2) Lus10024292 [exp] 937 / 0 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G038500 [exp] 1439 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 1425 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G144500 [exp] 1246 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.007G018100 [exp] 1141 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.005G232600 [exp] 1134 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 982 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.009G012400 [exp] 924 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G099800 [exp] 903 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.017G057900 [exp] 864 / 0 AT2G32810 1351 / 0.0 beta-galactosidase 9, beta galactosidase 9 (.1.2) Potri.011G044300 [exp] 859 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10015625 pacid=23147229 polypeptide=Lus10015625 locus=Lus10015625.g ID=Lus10015625.BGIv1.0 annot-version=v1.0 ATGGCATCCCGAAGCTTCACAATAACTAAGAACAGCCACAATGTGTTCTCCATTCTGATTTCCTCCATCTTTCTGGTACTCTGTTTTTGCTCTGTTTCCG CCACCGTGACTTACGATTCCACGGCGATTAAAATCAATGGACAGAGAAAGATTCTAATCTCTGGTTCGATCCACTACCCGAGAAGCACCCCTGAGATGTG GCCGGATCTCATCCTGAAAGCTAAAGAAGGAGGAATCGACGTTATCCAGACTTACGTCTTCTGGAATGGCCATGAGCCTTCTCCTGGAAAATATTACTTT GAGGGGAACTATGATTTGGTGAAGTTCATCAAGCTGGTGAAGGATGCAGGGCTCTATGTTCACCTCAGGATTGGTCCTTATGTCTGTGCTGAGTGGAACT TTGGAGGATTCCCAGTTTGGCTCAAGTACATTCCAGGCATCAGTTTCAGAACTGACAATGGGCCTTTCAAGGCACAAATGCAAAAGTTTACTACAAAGAT AGTGAACATGATGAAAGCAGAGAGGCTGTTTGAGAATCAAGGAGGTCCAATTATTCTATCTCAGATTGAGAATGAGTATGGTCCCATGGAGAATGAGATT GGTGCATCTGGCAAAGCTTACACAAAATGGGCAGCAGATATGGCTTTACAACTTGGGACTGGAGTCCCATGGGTCATGTGCAAGCAAGACGATGCCCCTG ATCCTATTATCAACACTTGCAATGGCTTCTACTGTGACTACTTCTCCCCCAACAAAGACTACAAGCCTAAGATGTGGACCGAAGCTTGGACCGGCTGGTT TACCGAATTCGGTGGCGCAGTGCCTCATCGACCAGCGGAAGACATAGCATTTGCAGTTGCAAGGTTCATACAGAAGGGAGGATCATTCATCAATTACTAT ATGTATCATGGAGGGACCAACTTCGGGCGAACAGCCGGTGGACCATTCATCGCGACAAGCTACGACTACGACGCTCCCCTGGACGAGTACGGCCTCCTGA GGCAGCCGAAATGGGGACACCTGAAAGACCTCCACAGAGCGATCAAGCTCTGCGAGCCAGCTCTCGTCTCGGGAATTGCTCCGACCGTGACTCCACTCGG ACGCTACCAGGAGGCTCGAGTCTTCAGAACAAAGTCAGGAGCGTGTTCAGCGTTCCTAGCGAACTACAACTCGAGATCGTACGCGAAAGTGTCATTTGGG AACATGCATTACAACCTCCCGCCGTGGTCCATCAGCATCCTCCCCGACTGCAAGAACACGGTGTACAACACTGCGAGAGTCGGTGCTCAGACTTCGACGA TGAAGATGACTCCTGTCCCTAGACGCGGCGGTGGTGGATTCTCGTGGCAAGCGTATAGCGAAGAGCCTTCCGTTGACGGCGACAAAAGCTTCACTATGGC TGGATTGCTAGAACAGATCAACACAACTAGAGATGGTACTGACTATTTGTGGTACATGACAGATATCAGAGTTCTAAACCTTGTGATTATGATTTTATTG CTGCAGTGTACAAATAAAATCCGGAGAGAGCTTCTCCGAACCGGGAATCATCCGGTTCTTACCGTCAAGTCCGCTGGCCACGCTCTGCACGTCTATGTCA ACGGCCGCCTAGCAGGAACTGCTTACGGAAGTCTCGAATCTCCAAAGCTGACATTCAGTCAAGGTGTAAACTTGAGGGCCGGCATCAACCGAATCGCCCT CCTGAGCATTGCTGTCGGTCTCCCGAACGTCGGTCCGCATTTCGAGACATGGAACGCTGGCATCCTTGGGCCGGTGATGCTGACCGGACTCAACGAGGGC CGGAAGGACTTGTCGTGGCAGAAGTGGACTTATAAGGTTGGCATGAAAGGTGAACATCTGAGCCTTCATTCCCTCAGTGGGAGCCCATCAGTTGAGTGGG CCCAAGGGTCTGTAGTTTCCCAAAGACAGCCTCTCATGTGGTACAAGACCACATTCAATGCTCCTGCAGGGAACGCCCCGCTGGCTTTGGACATGGCAAC AATGTCCAAAGGCCAGGCGTGGATAAACGGCCAGAGCGTAGGCCGGTACTGGCCGGCCTACAAAGCAGCATCCTCCGGTGGTAGCTGCACTGGCTGCAGC TATGCGGGAACATACAACGAGAAGAAATGCTCGAGCAACTGCGGAGAACCTTCACAGAGATGGTACCACGTCCCACGTTCGTGGCTGAAGCCCACTGGCA ACTTACTGGTCGTTTTTGAGGAATCCGGTGGAGACCCGAACGGAATCTCTCTCGTGAGAAGAGAAGTAGATACAATATGCGCGGACATCTACGAATGGCA GCCGACATTGATGAACTACCAGATGCAAGCATCCGGGAAAGCAAACAAACCCCTCCGGCCGAAAGTCCACCTGTCCTGTGGCCCTGGTCAGAAAATGTCG TCGATTAAGTTTGCTAGCTTCGGTACGCCACAGGGAACCTGCGGAAGCTACAGACAAGGAGGGTGCCATGCATTCCACTCTTATGATGCCTTCAATAAGC TCTGTGTTGGCCAGAACAGCTGCTCAGTGACAGTAGCGCCTGGAATGTTCGGGGGAGATCCGTGCCCCAAGGTAATGAAGAAGCTTGCGGTCGAAGCCAT CTGCAGCTGA
AA sequence Show only first row Show all	>Lus10015625 pacid=23147229 polypeptide=Lus10015625 locus=Lus10015625.g ID=Lus10015625.BGIv1.0 annot-version=v1.0 MASRSFTITKNSHNVFSILISSIFLVLCFCSVSATVTYDSTAIKINGQRKILISGSIHYPRSTPEMWPDLILKAKEGGIDVIQTYVFWNGHEPSPGKYYF EGNYDLVKFIKLVKDAGLYVHLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNGPFKAQMQKFTTKIVNMMKAERLFENQGGPIILSQIENEYGPMENEI GASGKAYTKWAADMALQLGTGVPWVMCKQDDAPDPIINTCNGFYCDYFSPNKDYKPKMWTEAWTGWFTEFGGAVPHRPAEDIAFAVARFIQKGGSFINYY MYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGIAPTVTPLGRYQEARVFRTKSGACSAFLANYNSRSYAKVSFG NMHYNLPPWSISILPDCKNTVYNTARVGAQTSTMKMTPVPRRGGGGFSWQAYSEEPSVDGDKSFTMAGLLEQINTTRDGTDYLWYMTDIRVLNLVIMILL LQCTNKIRRELLRTGNHPVLTVKSAGHALHVYVNGRLAGTAYGSLESPKLTFSQGVNLRAGINRIALLSIAVGLPNVGPHFETWNAGILGPVMLTGLNEG RKDLSWQKWTYKVGMKGEHLSLHSLSGSPSVEWAQGSVVSQRQPLMWYKTTFNAPAGNAPLALDMATMSKGQAWINGQSVGRYWPAYKAASSGGSCTGCS YAGTYNEKKCSSNCGEPSQRWYHVPRSWLKPTGNLLVVFEESGGDPNGISLVRREVDTICADIYEWQPTLMNYQMQASGKANKPLRPKVHLSCGPGQKMS SIKFASFGTPQGTCGSYRQGGCHAFHSYDAFNKLCVGQNSCSVTVAPGMFGGDPCPKVMKKLAVEAICS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Lus10015625 [exp]	0	1
AT5G27830			unknown protein		Lus10029881 [exp]	2.2	0.9559
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10037156 [exp]	5.2	0.9379
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10026700 [exp]	5.3	0.9413
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028246 [exp]	6.7	0.9341
AT2G17880			Chaperone DnaJ-domain superfam...		Lus10028453 [exp]	10.2	0.9153
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Lus10041843 [exp]	10.4	0.9293
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10041748 [exp]	10.9	0.9286
AT5G20950			Glycosyl hydrolase family prot...		Lus10013646 [exp]	11.0	0.9250
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10038265 [exp]	12.0	0.9204
AT1G27290			unknown protein		Lus10003121 [exp]	12.7	0.9241

Compare expression of checked genes

Lus10015625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.