Plant FIBer expression Database

Lus10015626 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G55140 246 / 3e-82 Ribonuclease III family protein (.1.2)
AT3G13740 233 / 3e-77 Ribonuclease III family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037645
[exp]
375 / 5e-133 AT1G55140 274 / 4e-93 Ribonuclease III family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G200300
[exp]
254 / 2e-85 AT1G55140 257 / 1e-86 Ribonuclease III family protein (.1.2)
Potri.003G038400
[exp]
165 / 7e-52 AT1G55140 154 / 6e-48 Ribonuclease III family protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10015626 pacid=23147249 polypeptide=Lus10015626 locus=Lus10015626.g ID=Lus10015626.BGIv1.0 annot-version=v1.0
ATGACGACTGTAAGAGCTTCTTGGGACACCCAACAGCGACTAACTTACAATCCCAACGCCCCAAGGAACCCCAACAAGAAGAAACTCGTCACAGAAACCT
TATCCACCACCAGTAATTCCACGACATCTTCCTCTTCGCCGCCCAAGCTCACTCTGACTCCTCATTCGGTCTCAGAACTCCTCAGGCGCAACGTTCAGAG
CAAAGCTGTCGTACAAGATATCGACAATTCATACTTGGGATGTGATGTATGGCTTCCGAAGCCACCGAAAGTGGAGAAGCCTCGGTCAGCCTTCAATGCA
GCAACCCTGGCATATATCGGTGATGGCATCTACGAGCTATATGCTCGACGACATTTTCTATTCCCTCCTATGAACATCGACGAATATAATGATCGTGTGA
TGGCGGTAGTACGCTGTGAAGCACAGGACGCCTTACTTCAGAAACTCAAAGAAGAAGATTTCCTATCTACAGAAGAAAGAGGAATTCTAAAATGGGGGAA
GAACGTAGGTTCAGCGAAAACACGAACTAGGAGGCGTGCGGGTTCAGCTGTTTATAACAGAGCATCTTCGTTGGAAACACTAATTGGGCATCTCTACCTC
ACAGATTCAAACCGTTTGGACGAAGTCATGCAAAAGCTGGGATTCTCAGCTGGTTCTTCCTCGGAGATGATCTTACATGAAAATACTGGGTGCATTCCAG
GTGAGCAAGCTGATGAGATGAGCATCAAAGGTCAATGA
AA sequence
>Lus10015626 pacid=23147249 polypeptide=Lus10015626 locus=Lus10015626.g ID=Lus10015626.BGIv1.0 annot-version=v1.0
MTTVRASWDTQQRLTYNPNAPRNPNKKKLVTETLSTTSNSTTSSSSPPKLTLTPHSVSELLRRNVQSKAVVQDIDNSYLGCDVWLPKPPKVEKPRSAFNA
ATLAYIGDGIYELYARRHFLFPPMNIDEYNDRVMAVVRCEAQDALLQKLKEEDFLSTEERGILKWGKNVGSAKTRTRRRAGSAVYNRASSLETLIGHLYL
TDSNRLDEVMQKLGFSAGSSSEMILHENTGCIPGEQADEMSIKGQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G55140 Ribonuclease III family protei... Lus10015626
[exp]
0 1
AT4G34020 AtDJ1C DJ-1 homolog C, Class I glutam... Lus10019849
[exp]
1.7 0.8660
AT2G45630 D-isomer specific 2-hydroxyaci... Lus10040679
[exp]
6.1 0.7455
Lus10032008
[exp]
8.2 0.8164
AT2G21710 EMB2219 embryo defective 2219, Mitocho... Lus10042322
[exp]
9.5 0.8292
AT5G24490 30S ribosomal protein, putativ... Lus10032935
[exp]
10.6 0.8332
AT3G08800 SIEL SHORT-ROOT interacting embryon... Lus10000343
[exp]
14.7 0.7659
AT2G19800 MIOX2 myo-inositol oxygenase 2 (.1) Lus10006198
[exp]
14.7 0.7560
AT5G62650 Tic22-like family protein (.1) Lus10027537
[exp]
14.8 0.7599
AT3G06500 A/N-InvC alkaline/neutral invertase C, ... Lus10037817
[exp]
16.2 0.7859
AT4G35760 NAD(P)H dehydrogenase (quinone... Lus10028389
[exp]
16.5 0.7900

Lus10015626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.